C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427770 SOX10-003 ENSG00000100146 9606 - 22:37977923-37984346 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0001 VISTA 22:37683926-38284300
CIL_0008KJ CIL_0008KJ_0001 VISTA 22:37685616-38286450
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0008KA CIL_0008KA_0001 VISTA 22:37698338-38299192
CIL_00082J CIL_00082J_0001 VISTA 22:37733233-38334508
CIL_0008C1 CIL_0008C1_0001 VISTA 22:37746133-38346872
CIL_00082K CIL_00082K_0001 VISTA 22:37750385-38350990
CIL_0008MM CIL_0008MM_0001 VISTA 22:37872841-38473542
CIL_0003QJ CIL_0003QJ_0001 CGP 22:37943050-38041915
CIL_0007CX CIL_0007CX_0001 CGP 22:37952607-38041915
CIL_0003QD CIL_0003QD_0001 CGP 22:37970686-38075701

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040019 Sox10-201 protein_coding Mus_musculus 0 944
ENSMUST00000000579 Sox9-001 protein_coding Mus_musculus 0 455
ENSDART00000064500 sox9b-001 protein_coding Danio_rerio 0 292
ENSDART00000124464 sox9b-201 protein_coding Danio_rerio 0 283
ENSDART00000155048 sox9b-002 protein_coding Danio_rerio 0 230
ENSMUST00000054491 Sox18-001 protein_coding Mus_musculus 4e-21 106
ENSMUST00000170662 Sox21-001 protein_coding Mus_musculus 2e-20 104
ENSMUST00000047373 Sox15-001 protein_coding Mus_musculus 4e-16 90
ENSMUST00000180353 Sox1-001 protein_coding Mus_musculus 0.000000007 66

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