C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | SRY (sex determining region Y)-box 10 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000360880  |
SOX10-001 |
ENSG00000100146 |
9606 | - |
22:37972300-37987422  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00099H | CIL_00099H_0001 | VISTA | 22:37683926-38284300 |
| CIL_0008KJ | CIL_0008KJ_0001 | VISTA | 22:37685616-38286450 |
| CIL_0008BX | CIL_0008BX_0001 | VISTA | 22:37696030-38296592 |
| CIL_0008KA | CIL_0008KA_0001 | VISTA | 22:37698338-38299192 |
| CIL_00082J | CIL_00082J_0001 | VISTA | 22:37733233-38334508 |
| CIL_0008C1 | CIL_0008C1_0001 | VISTA | 22:37746133-38346872 |
| CIL_00082K | CIL_00082K_0001 | VISTA | 22:37750385-38350990 |
| CIL_0008MM | CIL_0008MM_0001 | VISTA | 22:37872841-38473542 |
| CIL_0003QJ | CIL_0003QJ_0001 | CGP | 22:37943050-38041915 |
| CIL_0007CX | CIL_0007CX_0001 | CGP | 22:37952607-38041915 |
| CIL_0003QD | CIL_0003QD_0001 | CGP | 22:37970686-38075701 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003713 | TAS | transcription coactivator activity |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | ISS | nucleus |
| GO:0006357 | TAS | regulation of transcription from RNA polymerase II promoter |
| GO:0009653 | TAS | anatomical structure morphogenesis |
| GO:0042802 | IPI | identical protein binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000040019
|
Sox10-201 | protein_coding | Mus_musculus | 0 | 2220 |
|
ENSMUST00000000579
|
Sox9-001 | protein_coding | Mus_musculus | 0 | 455 |
|
ENSDART00000064500
|
sox9b-001 | protein_coding | Danio_rerio | 0 | 292 |
|
ENSDART00000124464
|
sox9b-201 | protein_coding | Danio_rerio | 0 | 283 |
|
ENSDART00000155048
|
sox9b-002 | protein_coding | Danio_rerio | 0 | 230 |
|
ENSMUST00000054491
|
Sox18-001 | protein_coding | Mus_musculus | 1e-20 | 106 |
|
ENSMUST00000170662
|
Sox21-001 | protein_coding | Mus_musculus | 5e-20 | 104 |
|
ENSMUST00000047373
|
Sox15-001 | protein_coding | Mus_musculus | 0.000000000000001 | 90 |
|
ENSMUST00000180353
|
Sox1-001 | protein_coding | Mus_musculus | 0.00000002 | 66 |
