C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 4930506M07 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047511 4930506M07Rik-201 ENSMUSG00000041362 10090 - 19:58973358-59076069 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047511
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047511 1.570±0.68 0.805±0.29 4.565±0.10 7.430±2.37 1.053±0.21 1.908±0.30 0.484±0.06 1.042±0.41 1.715±1.11 2.688±1.03 0.284±0.08 3.034±3.29 5.928±1.90 1.373±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YJ CIL_0007YJ_0002 VISTA 19:58832961-59434097
CIL_0007ZF CIL_0007ZF_0002 VISTA 19:58834549-59435577
CIL_0004H0 CIL_0004H0_0003 CGP 19:58943425-59076069
CIL_0008H6 CIL_0008H6_0002 VISTA 19:58967128-59568278
CIL_0002OL CIL_0002OL_0002 CGP 19:58973358-59170056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005874 ISO microtubule
GO:0019900 IEA kinase binding
GO:0030426 ISA growth cone
GO:0044295 IDA axonal growth cone
GO:0048812 IEA neuron projection morphogenesis
GO:0051899 ISA membrane depolarization
GO:2000114 IGI regulation of establishment of cell polarity
GO:2001222 IGI regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260777 KIAA1598-201 protein_coding Homo_sapiens 0 2106
ENST00000355371 KIAA1598-202 protein_coding Homo_sapiens 0 2466
ENST00000392901 KIAA1598-203 protein_coding Homo_sapiens 0 1965
ENST00000392903 KIAA1598-204 protein_coding Homo_sapiens 0 2254
ENST00000490615 KIAA1598-004 processed_transcript Homo_sapiens 0 281
ENST00000497044 KIAA1598-002 processed_transcript Homo_sapiens 0 2098
ENST00000615301 KIAA1598-001 protein_coding Homo_sapiens 0 1781

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