C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009AF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs628 VISTA 9606 9:-140343-460780
GeneTranscriptPositionBiotype
ENSG00000107099 (DOCK8)
dedicator of cytokinesis 8 		ENST00000382329 (DOCK8-005) 366251-465255 protein_coding
ENST00000382331 (DOCK8-009) 366229-405099 protein_coding
ENST00000382341 (DOCK8-002) 273050-340620 retained_intron
ENST00000432829 (DOCK8-001) 214865-465259 protein_coding
ENST00000453981 (DOCK8-201) 273048-465259 protein_coding
ENST00000454469 (DOCK8-010) 214868-340620 retained_intron
ENST00000462618 (DOCK8-016) 463555-465247 processed_transcript
ENST00000469197 (DOCK8-008) 214854-286636 nonsense_mediated_decay
ENST00000469391 (DOCK8-012) 273070-464526 protein_coding
ENST00000474772 (DOCK8-007) 311958-314466 processed_transcript
ENST00000478380 (DOCK8-011) 273066-312941 retained_intron
ENST00000479404 (DOCK8-013) 215171-289579 protein_coding
ENST00000483757 (DOCK8-004) 273059-381387 nonsense_mediated_decay
ENST00000487230 (DOCK8-014) 273050-304703 protein_coding
ENST00000493666 (DOCK8-015) 420116-426953 processed_transcript
ENST00000495184 (DOCK8-006) 273084-465241 retained_intron
ENST00000524396 (DOCK8-018) 214865-340620 nonsense_mediated_decay
ENSG00000170122 (FOXD4)
forkhead box D4 		ENST00000382500 (FOXD4-001) 116231-118204 protein_coding
ENSG00000181404 (WASH1)
WAS protein family homolog 1 		ENST00000442898 (WASH1-001) 14521-29739 protein_coding
ENSG00000183784 (C9orf66)
chromosome 9 open reading frame 66 		ENST00000382387 (C9orf66-001) 212824-215741 protein_coding
ENSG00000218839 (FAM138C)
family with sequence similarity 138, member C 		ENST00000305248 (FAM138C-002) 34965-35871 lincRNA
ENST00000449442 (FAM138C-001) 34394-35860 lincRNA
ENSG00000227155 (RP11-165F24.3)
 ENST00000415004 (RP11-165F24.3-001) 454304-492112 antisense
ENST00000585631 (RP11-165F24.3-013) 456201-460507 antisense
ENST00000585819 (RP11-165F24.3-003) 456521-470934 antisense
ENST00000585944 (RP11-165F24.3-014) 454432-456988 antisense
ENST00000586805 (RP11-165F24.3-002) 454585-470961 antisense
ENST00000588474 (RP11-165F24.3-011) 456530-466866 antisense
ENST00000588989 (RP11-165F24.3-010) 457004-467219 antisense
ENST00000589287 (RP11-165F24.3-006) 454447-469802 antisense
ENST00000589387 (RP11-165F24.3-007) 454576-469802 antisense
ENST00000590240 (RP11-165F24.3-012) 456211-460227 antisense
ENST00000590518 (RP11-165F24.3-009) 456545-467336 antisense
ENST00000591577 (RP11-165F24.3-005) 454457-469836 antisense
ENST00000592805 (RP11-165F24.3-008) 456518-467390 antisense
ENST00000593137 (RP11-165F24.3-004) 456204-470816 antisense
ENST00000608617 (RP11-165F24.3-015) 459716-466065 antisense
ENSG00000227518 (MIR1302-9)
microRNA 1302-2 		ENST00000422679 (MIR1302-9-001) 27657-30891 antisense
ENSG00000227917 (RP11-143M1.3)
 ENST00000427318 (RP11-143M1.3-002) 100994-102941 lincRNA
ENST00000435421 (RP11-143M1.3-001) 100804-102850 lincRNA
ENSG00000231808 (LINC01388)
long intergenic non-protein coding RNA 1388 		ENST00000416242 (LINC01388-001) 112713-113754 lincRNA
ENSG00000235880 (RP11-59O6.3)
 ENST00000429661 (RP11-59O6.3-001) 267966-273002 antisense
ENSG00000236875 (DDX11L5)
DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 5 		ENST00000421620 (DDX11L5-001) 12134-13783 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Transcripts
Structures from Ensembl
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CIL_0009AF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs628 VISTA 10090 19:24645396-25246544
GeneTranscriptPositionBiotype
ENSMUSG00000024878 (Cbwd1)
COBW domain containing 1 		ENSMUST00000025815 (Cbwd1-201) 24919916-24961616 protein_coding
ENSMUSG00000032702 (Kank1)
KN motif and ankyrin repeat domains 1 		ENSMUST00000049400 (Kank1-001) 25236975-25434496 protein_coding
ENSMUST00000137260 (Kank1-003) 25395303-25409772 processed_transcript
ENSMUST00000146647 (Kank1-002) 25406699-25425984 protein_coding
ENSMUST00000155788 (Kank1-004) 25422239-25424508 retained_intron
ENSMUSG00000041731 (Pgm5)
phosphoglucomutase 5 		ENSMUST00000047666 (Pgm5-001) 24683016-24861855 protein_coding
ENSMUST00000129127 (Pgm5-003) 24816231-24861652 retained_intron
ENSMUST00000133692 (Pgm5-004) 24684551-24763078 processed_transcript
ENSMUST00000150339 (Pgm5-002) 24816130-24861687 retained_intron
ENSMUSG00000048572 (Tmem252)
transmembrane protein 252 		ENSMUST00000057243 (Tmem252-201) 24674008-24679661 protein_coding
ENSMUSG00000051490 (Foxd4)
forkhead box D4 		ENSMUST00000058600 (Foxd4-201) 24898965-24901309 protein_coding
ENSMUSG00000052085 (Dock8)
dedicator of cytokinesis 8 		ENSMUST00000025831 (Dock8-201) 24999529-25202432 protein_coding
ENSMUSG00000058927 (Gm10053)
predicted gene 10053 		ENSMUST00000073080 (Gm10053-201) 24875686-24876634 protein_coding
ENSMUSG00000065634 (Gm24252)
predicted gene, 24252 		ENSMUST00000083700 (Gm24252-201) 25166085-25166216 snoRNA
ENSMUSG00000095097 (Gm23658)
predicted gene, 23658 		ENSMUST00000083233 (Gm23658-201) 24942236-24942367 snoRNA
ENSMUSG00000097950 (Gm17800)
predicted gene, 17800 		ENSMUST00000182466 (Gm17800-001) 24692400-24693370 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009AF_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_0009AF_0002ENSMUSG00000024878ENSMUST00000025815ENSMUSG00000032702ENSMUST00000049400ENSMUST00000137260ENSMUST00000146647ENSMUST00000155788ENSMUSG00000041731ENSMUST00000047666ENSMUST00000129127ENSMUST00000133692ENSMUST00000150339ENSMUSG00000048572ENSMUST00000057243ENSMUSG00000051490ENSMUST00000058600ENSMUSG00000052085ENSMUST00000025831ENSMUSG00000058927ENSMUST00000073080ENSMUSG00000065634ENSMUST00000083700ENSMUSG00000095097ENSMUST00000083233ENSMUSG00000097950ENSMUST00000182466
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009AF_0001ENSG00000107099ENST00000382329ENST00000382331ENST00000382341ENST00000432829ENST00000453981ENST00000454469ENST00000462618ENST00000469197ENST00000469391ENST00000474772ENST00000495184ENSG00000170122ENST00000382500ENSG00000181404ENST00000442898ENSG00000183784ENST00000382387ENSG00000218839ENST00000305248ENST00000449442ENSG00000227155ENST00000415004ENST00000585631ENST00000585819ENST00000585944ENST00000586805ENST00000589287ENST00000590240ENST00000590518ENST00000591577ENST00000592805ENST00000593137ENSG00000227518ENST00000422679ENSG00000227917ENST00000427318ENST00000435421ENSG00000231808ENST00000416242ENSG00000235880ENST00000429661ENSG00000236875ENST00000421620CIL_0009AF_0002ENSMUSG00000024878ENSMUST00000025815ENSMUSG00000032702ENSMUST00000049400ENSMUST00000137260ENSMUST00000146647ENSMUSG00000041731ENSMUST00000047666ENSMUST00000129127ENSMUST00000133692ENSMUST00000150339ENSMUSG00000048572ENSMUST00000057243ENSMUSG00000051490ENSMUST00000058600ENSMUSG00000052085ENSMUST00000025831ENSMUSG00000058927ENSMUST00000073080ENSMUSG00000065634ENSMUST00000083700ENSMUSG00000095097ENSMUST00000083233ENSMUSG00000097950ENSMUST00000182466
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107099 ENST00000382329 N/A N/A N/A 0.290±0.00 N/A 1.037±0.00 N/A 2.158±0.00 N/A N/A N/A 1.020±0.42 1.090±0.18 3.151±0.00
ENST00000382331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.500±0.00 N/A N/A N/A
ENST00000382341 N/A N/A N/A N/A N/A 1.809±0.00 N/A N/A N/A 4.165±0.00 N/A N/A N/A N/A
ENST00000432829 2.028±0.00 2.219±0.00 1.609±0.00 0.506±0.10 1.760±0.00 N/A 0.512±0.00 1.445±0.67 0.526±0.29 1.079±0.00 0.170±0.00 0.809±0.30 4.030±0.35 0.710±0.00
ENST00000453981 N/A 3.167±0.00 N/A N/A N/A N/A N/A N/A N/A 0.667±0.00 N/A 0.533±0.00 0.812±0.00 N/A
ENST00000454469 N/A N/A N/A N/A N/A N/A N/A 2.099±0.00 1.603±0.00 N/A N/A N/A N/A N/A
ENST00000462618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.545±0.00 N/A N/A
ENST00000469197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.383±0.00 N/A N/A N/A
ENST00000469391 N/A N/A N/A N/A 0.968±0.00 0.606±0.00 0.127±0.00 N/A 0.374±0.00 N/A N/A N/A 3.524±0.00 1.458±0.61
ENST00000474772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.180±0.00
ENST00000478380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495184 N/A N/A 0.535±0.00 N/A 1.388±0.00 0.658±0.45 N/A N/A 0.186±0.00 1.549±0.00 0.153±0.00 0.381±0.00 N/A 1.175±0.00
ENST00000524396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170122 ENST00000382500 0.066±0.00 N/A 0.077±0.00 0.109±0.00 0.014±0.00 0.030±0.00 N/A 0.057±0.00 0.025±0.00 0.089±0.00 N/A 0.141±0.05 0.101±0.04 0.509±0.46
ENSG00000181404 ENST00000442898 0.390±0.00 1.064±0.00 N/A 0.629±0.03 0.574±0.00 0.856±0.00 0.304±0.00 1.410±0.00 0.620±0.00 1.934±0.00 1.461±0.06 1.435±0.95 2.361±1.41 3.028±0.76
ENSG00000183784 ENST00000382387 N/A N/A 2.363±0.00 N/A N/A N/A N/A 2.363±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000218839 ENST00000305248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A
ENST00000449442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A
ENSG00000227155 ENST00000415004 N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.242±0.11
ENST00000585631 N/A 0.781±0.00 N/A N/A N/A N/A N/A 0.484±0.00 0.090±0.00 0.943±0.00 N/A 0.099±0.03 N/A 0.077±0.00
ENST00000585819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.279±0.06
ENST00000585944 N/A N/A N/A 0.043±0.03 N/A 0.483±0.00 0.012±0.00 0.086±0.00 N/A 0.145±0.00 N/A 0.047±0.02 0.047±0.01 N/A
ENST00000586805 N/A N/A N/A 0.052±0.00 N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A
ENST00000588474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 N/A
ENST00000589387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590240 0.137±0.00 N/A N/A 0.051±0.00 N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A 0.211±0.00
ENST00000590518 N/A N/A N/A N/A 0.092±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.275±0.00
ENST00000592805 N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000593137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.036±0.00 0.058±0.00 N/A
ENST00000608617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227518 ENST00000422679 0.207±0.00 0.964±0.00 3.657±0.00 1.359±0.96 2.046±1.77 2.221±2.16 0.694±0.49 0.764±0.43 0.891±0.84 2.941±0.00 0.391±0.30 1.884±1.82 0.254±0.10 1.696±1.02
ENSG00000227917 ENST00000427318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.796±3.60
ENST00000435421 N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000231808 ENST00000416242 0.716±0.00 0.146±0.00 N/A 0.431±0.00 N/A 0.137±0.00 0.184±0.00 0.798±0.00 N/A 0.559±0.00 N/A N/A N/A 17.960±17.10
ENSG00000235880 ENST00000429661 N/A 0.297±0.00 N/A 0.130±0.00 0.438±0.00 N/A N/A N/A 1.164±0.00 0.660±0.00 N/A N/A N/A 0.499±0.00
ENSG00000236875 ENST00000421620 N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 0.077±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024878 ENSMUST00000025815 1.630±0.42 2.430±0.96 3.113±0.56 2.469±0.65 1.374±0.38 0.943±0.56 1.330±0.32 1.833±0.35 2.309±1.63 1.343±0.41 3.676±0.33 1.865±1.34 9.100±3.50 4.937±1.56
ENSMUSG00000032702 ENSMUST00000049400 4.317±2.63 1.964±0.55 31.059±1.32 1.218±0.69 3.186±1.51 8.070±0.79 6.015±2.47 11.967±2.19 4.334±1.94 6.685±2.86 0.471±0.05 8.467±2.69 8.652±2.71 1.751±0.82
ENSMUST00000137260 N/A 5.154±0.00 N/A N/A 7.157±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146647 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.968±0.00 N/A 3.140±0.00 2.471±0.00 N/A
ENSMUST00000155788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041731 ENSMUST00000047666 22.863±18.42 7.059±2.81 98.137±1.99 1.383±0.80 2.467±0.87 40.953±7.22 19.339±2.01 4.047±0.71 0.262±0.16 13.565±2.59 2.910±0.79 29.308±14.97 1.617±2.57 1.287±1.10
ENSMUST00000129127 N/A N/A N/A N/A 0.875±0.00 N/A N/A N/A N/A N/A N/A N/A 0.196±0.00 N/A
ENSMUST00000133692 N/A N/A N/A N/A 3.128±1.28 N/A N/A N/A 0.356±0.00 N/A N/A N/A 0.527±0.00 N/A
ENSMUST00000150339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.079±0.00 0.194±0.00
ENSMUSG00000048572 ENSMUST00000057243 2.269±0.20 0.799±0.19 67.724±14.44 0.313±0.01 0.905±0.45 2.626±0.00 N/A 11.426±4.42 0.130±0.08 2.422±1.06 1.305±0.24 2.576±0.77 2.161±2.91 0.317±0.27
ENSMUSG00000051490 ENSMUST00000058600 0.009±0.00 0.026±0.00 N/A 0.089±0.05 N/A N/A 0.015±0.00 N/A 0.054±0.05 0.073±0.04 N/A 0.028±0.00 0.018±0.01 0.162±0.08
ENSMUSG00000052085 ENSMUST00000025831 3.484±1.14 5.628±1.07 14.093±3.85 0.279±0.31 8.650±3.70 4.431±0.53 0.782±0.30 7.678±1.68 2.673±1.74 13.101±0.36 0.378±0.18 8.357±1.49 5.880±4.57 1.323±0.28
ENSMUSG00000058927 ENSMUST00000073080 0.051±0.00 N/A 4.889±4.87 3.582±3.57 0.157±0.00 N/A 0.066±0.01 N/A 4.892±6.75 N/A 0.439±0.16 N/A 0.016±0.00 N/A
ENSMUSG00000065634 ENSMUST00000083700 N/A N/A 8.963±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 12.917±0.00 N/A N/A
ENSMUSG00000095097 ENSMUST00000083233 N/A N/A N/A N/A N/A N/A N/A N/A 1.904±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000097950 ENSMUST00000182466 0.242±0.08 N/A 0.262±0.08 0.021±0.01 0.084±0.04 0.120±0.05 0.046±0.02 0.031±0.00 N/A 0.178±0.08 N/A 0.084±0.04 0.042±0.00 0.028±0.00

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