C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048698 Taf6-002 ENSMUSG00000036980 10090 - 5:138178617-138187226 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048698
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048698 23.484±3.29 17.827±7.59 21.255±3.08 32.878±13.56 21.019±5.34 17.119±2.33 21.777±1.91 18.903±2.50 18.650±9.93 19.870±4.62 17.225±1.64 33.455±10.41 27.271±7.78 69.120±3.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0003DY CIL_0003DY_0002 CGP 5:138164583-138178708
CIL_0005LK CIL_0005LK_0002 CGP 5:138172002-138187451
CIL_0005LJ CIL_0005LJ_0002 CGP 5:138178617-138193918

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0046982 IEA protein heterodimerization activity
GO:0051090 IEA regulation of sequence-specific DNA binding transcription factor activity
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344095 TAF6-001 protein_coding Homo_sapiens 0 2368
ENST00000416938 AP4M1-017 nonsense_mediated_decay Homo_sapiens 0 226
ENST00000421980 TAF6-003 nonsense_mediated_decay Homo_sapiens 0 1853
ENST00000437822 TAF6-002 protein_coding Homo_sapiens 0 2368
ENST00000451699 TAF6-009 protein_coding Homo_sapiens 0.00000000001 75
ENST00000452041 TAF6-007 protein_coding Homo_sapiens 0 2368
ENST00000452438 TAF6-014 protein_coding Homo_sapiens 0 518
ENST00000453269 TAF6-004 protein_coding Homo_sapiens 0 2370
ENST00000460673 TAF6-012 protein_coding Homo_sapiens 0.000000004 66
ENST00000472509 TAF6-016 protein_coding Homo_sapiens 0 2368
ENST00000487115 TAF6-006 retained_intron Homo_sapiens 0 309
ENST00000497233 TAF6-011 processed_transcript Homo_sapiens 0.000000000006 75

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