C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048794 Hoxa5-001 ENSMUSG00000038253 10090 - 6:52201754-52204587 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048794
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048794 2.141±1.00 6.396±3.91 2.667±1.02 8.376±6.15 2.514±1.15 7.121±0.96 0.464±0.18 3.878±0.82 0.466±0.42 20.336±5.61 0.922±0.17 7.019±3.48 0.247±0.13 0.084±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003PB CIL_0003PB_0002 CGP 6:52189671-52204587
CIL_0003PC CIL_0003PC_0002 CGP 6:52201754-52208722

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0002009 IMP morphogenesis of an epithelium
GO:0003016 IMP respiratory system process
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007389 IMP pattern specification process
GO:0007585 IMP respiratory gaseous exchange
GO:0009952 IMP anterior/posterior pattern specification
GO:0010870 IEA positive regulation of receptor biosynthetic process
GO:0016477 IMP cell migration
GO:0016525 IEA negative regulation of angiogenesis
GO:0030324 IMP lung development
GO:0030878 IMP thyroid gland development
GO:0033599 IMP regulation of mammary gland epithelial cell proliferation
GO:0035264 IMP multicellular organism growth
GO:0043065 IEA positive regulation of apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0045639 IEA positive regulation of myeloid cell differentiation
GO:0045647 IEA negative regulation of erythrocyte differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048286 IMP lung alveolus development
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development
GO:0060435 IMP bronchiole development
GO:0060439 IMP trachea morphogenesis
GO:0060441 IMP epithelial tube branching involved in lung morphogenesis
GO:0060480 IMP lung goblet cell differentiation
GO:0060481 IMP lobar bronchus epithelium development
GO:0060484 IMP lung-associated mesenchyme development
GO:0060535 IMP trachea cartilage morphogenesis
GO:0060536 IMP cartilage morphogenesis
GO:0060574 IMP intestinal epithelial cell maturation
GO:0060638 IMP mesenchymal-epithelial cell signaling
GO:0060644 IMP mammary gland epithelial cell differentiation
GO:0060749 IMP mammary gland alveolus development
GO:0060764 IMP cell-cell signaling involved in mammary gland development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222726 HOXA5-001 protein_coding Homo_sapiens 0 2442
ENST00000239165 HOXB7-001 protein_coding Homo_sapiens 2e-25 121
ENST00000467314 HOXB7-003 processed_transcript Homo_sapiens 8e-26 121
ENST00000520854 HOXA5-002 processed_transcript Homo_sapiens 0 396
ENST00000567101 HOXB7-008 processed_transcript Homo_sapiens 9e-26 121

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