C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000239165 HOXB7-001 ENSG00000260027 9606 - 17:48607227-48611020 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000239165
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000239165 5.586±0.00 3.904±0.00 0.692±0.00 0.054±0.00 2.804±2.07 6.028±0.00 0.277±0.00 21.126±0.00 0.240±0.16 0.960±0.00 0.233±0.00 3.095±2.45 4.040±1.99 4.504±4.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0007275 NAS multicellular organismal development
GO:0009952 IEA anterior/posterior pattern specification
GO:0030099 IEA myeloid cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0090190 IEA positive regulation of branching involved in ureteric bud morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049352 Hoxb7-001 protein_coding Mus_musculus 0 1175
ENSMUST00000000704 Hoxb6-201 protein_coding Mus_musculus 0 243
ENSMUST00000173432 Hoxb6-001 protein_coding Mus_musculus 0 243
ENSMUST00000151596 Hoxb7-002 processed_transcript Mus_musculus 2.94273e-44 183
ENSMUST00000048794 Hoxa5-001 protein_coding Mus_musculus 2e-25 121
ENSDART00000012470 hoxb4a-001 protein_coding Danio_rerio 1e-17 95
ENSDART00000151584 hoxb4a-002 protein_coding Danio_rerio 1e-17 95

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