C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049845 Plxna1-201 ENSMUSG00000030084 10090 - 6:89319015-89357717 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaTestisENSMUST00000049845
Transcript ID Brain Liver Ovary Placenta Testis
ENSMUST00000049845 4.496±0.00 0.902±0.00 9.969±0.07 1.888±0.00 0.855±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EC CIL_0008EC_0002 VISTA 6:88734676-89336253
CIL_0005JO CIL_0005JO_0002 CGP 6:89316316-89595652

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0014910 IMP regulation of smooth muscle cell migration
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0017154 IPI semaphorin receptor activity
GO:0060666 IDA dichotomous subdivision of terminal units involved in salivary gland branching
GO:0071526 IPI semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321063 PLXNA4-201 protein_coding Homo_sapiens 0 1393
ENST00000359827 PLXNA4-001 protein_coding Homo_sapiens 0 1393
ENST00000367033 PLXNA2-001 protein_coding Homo_sapiens 0 1430
ENST00000369682 PLXNA3-001 protein_coding Homo_sapiens 0 1550
ENST00000393409 PLXNA1-001 protein_coding Homo_sapiens 0 6700
ENST00000463510 PLXNA2-004 processed_transcript Homo_sapiens 0 294
ENST00000491066 PLXNA3-003 retained_intron Homo_sapiens 0 272
ENST00000496550 PLXNA4-005 retained_intron Homo_sapiens 0 401
ENST00000497802 PLXNA3-002 retained_intron Homo_sapiens 0 346
ENST00000503234 PLXNA1-002 retained_intron Homo_sapiens 0 1657
ENST00000505278 PLXNA1-004 processed_transcript Homo_sapiens 0 512

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