C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane channel-like gene family 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050874 Tmc8-001 ENSMUSG00000050106 10090 + 11:117782297-117793028 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverTestisENSMUST00000050874
Transcript ID Adipose Adrenal Brain Breast Heart Liver Testis
ENSMUST00000050874 4.057±0.00 2.378±0.00 0.467±0.06 6.541±0.26 0.874±0.13 10.891±5.55 0.634±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_00009V CIL_00009V_0002 CGP 11:117654289-117782198
CIL_0000A9 CIL_0000A9_0002 CGP 11:117765988-117793110
CIL_00037M CIL_00037M_0002 CGP 11:117782076-117807301

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006811 IEA ion transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318430 TMC8-002 protein_coding Homo_sapiens 0 1875
ENST00000589691 TMC8-003 protein_coding Homo_sapiens 0 1712
ENST00000590184 TMC8-013 processed_transcript Homo_sapiens 0 191
ENST00000591003 TMC8-009 processed_transcript Homo_sapiens 0 294
ENST00000591983 TMC8-008 retained_intron Homo_sapiens 0 327

Loading