C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00037M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167895-ENSG00000187997 CGP 9606 17:78130770-78166177
GeneTranscriptPositionBiotype
ENSG00000167895 (TMC8)
transmembrane channel-like 8 		ENST00000318430 (TMC8-002) 78130786-78142968 protein_coding
ENST00000589691 (TMC8-003) 78130788-78142967 protein_coding
ENST00000590184 (TMC8-013) 78134949-78138071 processed_transcript
ENST00000590426 (TMC8-012) 78130770-78131595 protein_coding
ENST00000590799 (TMC8-006) 78130778-78132465 protein_coding
ENST00000591003 (TMC8-009) 78137654-78138167 processed_transcript
ENST00000591144 (TMC8-014) 78138363-78141229 processed_transcript
ENST00000591983 (TMC8-008) 78134868-78138071 retained_intron
ENST00000592399 (TMC8-007) 78134868-78137047 processed_transcript
ENSG00000187997 (C17orf99)
chromosome 17 open reading frame 99 		ENST00000340363 (C17orf99-001) 78146353-78166177 protein_coding
ENST00000451352 (C17orf99-002) 78160064-78166155 processed_transcript
ENST00000586029 (C17orf99-005) 78161040-78166135 processed_transcript
ENST00000586246 (C17orf99-006) 78164558-78166154 processed_transcript
ENST00000586999 (C17orf99-004) 78146405-78161073 protein_coding
ENST00000591995 (C17orf99-003) 78146854-78164304 protein_coding
ENSG00000267679 (EIF5AP2)
eukaryotic translation initiation factor 5A pseudogene 2 		ENST00000585668 (EIF5AP2-001) 78157403-78159135 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00037M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050106-ENSMUSG00000025573 CGP 10090 11:117782076-117807301
GeneTranscriptPositionBiotype
ENSMUSG00000025572 (Tmc6)
transmembrane channel-like gene family 6 		ENSMUST00000026659 (Tmc6-001) 117765988-117780639 protein_coding
ENSMUST00000103025 (Tmc6-002) 117775357-117780621 protein_coding
ENSMUST00000127227 (Tmc6-007) 117779192-117780658 protein_coding
ENSMUST00000131606 (Tmc6-003) 117765988-117779648 nonsense_mediated_decay
ENSMUST00000136729 (Tmc6-005) 117778742-117780944 protein_coding
ENSMUST00000143406 (Tmc6-006) 117775717-117779650 protein_coding
ENSMUST00000148220 (Tmc6-009) 117766060-117769073 retained_intron
ENSMUST00000149589 (Tmc6-008) 117770078-117773043 nonsense_mediated_decay
ENSMUST00000152304 (Tmc6-004) 117778938-117782198 protein_coding
ENSMUSG00000025573 (6030468B19Rik)
RIKEN cDNA 6030468B19 gene 		ENSMUST00000106331 (6030468B19Rik-001) 117797660-117807301 protein_coding
ENSMUSG00000050106 (Tmc8)
transmembrane channel-like gene family 8 		ENSMUST00000050874 (Tmc8-001) 117782297-117793028 protein_coding
ENSMUST00000106334 (Tmc8-004) 117782315-117793110 protein_coding
ENSMUST00000117781 (Tmc8-005) 117782385-117792883 protein_coding
ENSMUST00000119455 (Tmc8-006) 117782658-117793083 protein_coding
ENSMUST00000127080 (Tmc8-002) 117782076-117784150 protein_coding
ENSMUST00000156458 (Tmc8-003) 117791188-117792613 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00037M_0001ENSG00000167895ENST00000318430ENST00000589691ENST00000590184ENST00000590426ENST00000590799ENST00000591003ENST00000591144ENST00000591983ENST00000592399ENSG00000187997ENST00000340363ENST00000451352ENST00000586029ENST00000586246ENST00000586999ENST00000591995ENSG00000267679ENST00000585668CIL_00037M_0002ENSMUSG00000025572ENSMUST00000026659ENSMUST00000103025ENSMUST00000127227ENSMUST00000131606ENSMUST00000136729ENSMUST00000143406ENSMUST00000148220ENSMUST00000149589ENSMUST00000152304ENSMUSG00000025573ENSMUST00000106331ENSMUSG00000050106ENSMUST00000050874ENSMUST00000106334ENSMUST00000117781ENSMUST00000119455ENSMUST00000127080ENSMUST00000156458
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00037M_0001ENSG00000167895ENST00000318430ENST00000589691ENSG00000187997ENST00000340363ENST00000451352ENST00000586029ENST00000586246ENST00000586999ENST00000591995ENSG00000267679ENST00000585668CIL_00037M_0002ENSMUSG00000025572ENSMUST00000026659ENSMUST00000148220ENSMUSG00000025573ENSMUST00000106331ENSMUSG00000050106ENSMUST00000050874ENSMUST00000106334ENSMUST00000117781ENSMUST00000119455
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167895 ENST00000318430 N/A 40.259±0.00 N/A N/A 1.773±0.00 N/A N/A N/A N/A 4.811±1.58 N/A N/A 3.758±0.74 N/A
ENST00000589691 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.733±0.00 N/A 5.194±0.00 N/A N/A
ENST00000590184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187997 ENST00000340363 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00 N/A N/A N/A N/A
ENST00000451352 0.108±0.00 0.384±0.00 N/A 0.139±0.00 0.192±0.00 0.135±0.06 0.046±0.00 0.348±0.00 0.098±0.00 0.093±0.00 0.008±0.00 0.182±0.12 N/A 0.123±0.00
ENST00000586029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.06 0.143±0.00 N/A
ENST00000586246 N/A N/A N/A N/A N/A N/A N/A 2.046±0.00 N/A N/A N/A 0.233±0.00 0.212±0.02 N/A
ENST00000586999 N/A N/A N/A 1.260±0.00 N/A N/A N/A N/A N/A N/A N/A 0.111±0.00 0.164±0.00 N/A
ENST00000591995 N/A N/A N/A N/A N/A 0.800±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267679 ENST00000585668 0.174±0.00 0.127±0.00 N/A 0.083±0.00 0.057±0.00 0.051±0.00 N/A 0.131±0.00 N/A 0.137±0.00 0.016±0.00 0.046±0.01 N/A 0.176±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025572 ENSMUST00000026659 15.693±5.11 18.279±5.81 21.899±2.59 1.025±0.04 20.376±9.44 46.375±2.36 3.716±1.27 13.044±2.01 14.523±13.15 26.545±3.05 0.875±0.41 15.658±4.97 5.136±1.27 2.466±1.15
ENSMUST00000103025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148220 N/A N/A N/A 2.897±0.00 N/A N/A N/A N/A N/A N/A 1.571±0.00 20.216±0.00 13.654±0.00 1.615±0.00
ENSMUST00000149589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025573 ENSMUST00000106331 0.064±0.06 0.053±0.01 0.016±0.00 0.082±0.01 0.249±0.09 0.223±0.10 0.047±0.02 0.042±0.01 68.589±57.09 0.144±0.07 0.081±0.05 0.099±0.02 0.496±0.29 N/A
ENSMUSG00000050106 ENSMUST00000050874 4.057±0.00 2.378±0.00 N/A 0.467±0.06 6.541±0.26 N/A 0.874±0.13 N/A 10.891±5.55 N/A N/A N/A N/A 0.634±0.00
ENSMUST00000106334 1.913±0.00 N/A N/A N/A 11.050±2.21 8.170±0.86 1.188±0.41 N/A 9.018±4.05 N/A 0.521±0.16 N/A 2.041±0.20 0.623±0.00
ENSMUST00000117781 N/A N/A N/A N/A 2.207±0.00 N/A 2.338±0.00 N/A 0.950±0.14 N/A N/A N/A N/A N/A
ENSMUST00000119455 N/A N/A N/A N/A N/A 9.121±0.00 N/A N/A N/A N/A 0.268±0.00 3.192±0.00 3.671±0.32 N/A
ENSMUST00000127080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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