C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051558 Chd7-001 ENSMUSG00000041235 10090 + 4:8691365-8867659 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051558
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051558 0.635±0.00 0.807±0.21 0.716±0.16 5.172±3.27 1.503±0.79 2.675±1.25 0.211±0.00 0.361±0.17 1.449±1.17 0.976±0.42 2.047±1.12 0.925±0.58 2.663±1.58 0.481±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000379 CIL_000379_0002 CGP 4:8535644-8867659
CIL_0007J7 CIL_0007J7_0002 UCNEbase 4:8577404-8867660
CIL_0003FX CIL_0003FX_0002 CGP 4:8690406-9451691

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0001568 IMP blood vessel development
GO:0001701 IMP in utero embryonic development
GO:0003007 IMP heart morphogenesis
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0007417 IEA central nervous system development
GO:0007512 IMP adult heart development
GO:0007605 IMP sensory perception of sound
GO:0007626 IMP locomotory behavior
GO:0007628 IMP adult walking behavior
GO:0008015 IMP blood circulation
GO:0016568 IEA chromatin modification
GO:0021545 IEA cranial nerve development
GO:0021553 IMP olfactory nerve development
GO:0021772 IMP olfactory bulb development
GO:0030217 IEA T cell differentiation
GO:0030540 IMP female genitalia development
GO:0035116 IMP embryonic hindlimb morphogenesis
GO:0040018 IMP positive regulation of multicellular organism growth
GO:0042048 IMP olfactory behavior
GO:0042471 IMP ear morphogenesis
GO:0042472 IMP inner ear morphogenesis
GO:0043010 IMP camera-type eye development
GO:0043584 IMP nose development
GO:0048752 IGI semicircular canal morphogenesis
GO:0048806 IEA genitalia development
GO:0048844 IGI artery morphogenesis
GO:0050767 IMP regulation of neurogenesis
GO:0050890 IEA cognition
GO:0060021 IMP palate development
GO:0060041 IEA retina development in camera-type eye
GO:0060123 IEA regulation of growth hormone secretion
GO:0060173 IEA limb development
GO:0060324 IEA face development
GO:0060429 IMP epithelium development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000016208 chd7-201 protein_coding Danio_rerio 6.02558e-44 185
ENSDART00000135230 chd7-001 protein_coding Danio_rerio 6.02558e-44 185
ENSDART00000136876 chd7-003 retained_intron Danio_rerio 2e-39 171
ENST00000399982 CHD8-201 protein_coding Homo_sapiens 0 1044
ENST00000423902 CHD7-001 protein_coding Homo_sapiens 0 11810
ENST00000430710 CHD8-001 protein_coding Homo_sapiens 0 1044
ENST00000524602 CHD7-002 protein_coding Homo_sapiens 0 2239
ENST00000525508 CHD7-003 protein_coding Homo_sapiens 0 4457
ENST00000526846 CHD7-004 protein_coding Homo_sapiens 0 374
ENST00000527825 CHD7-012 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000527900 CHD7-005 nonsense_mediated_decay Homo_sapiens 0 385
ENST00000527921 CHD7-006 processed_transcript Homo_sapiens 0 641
ENST00000528280 CHD7-010 retained_intron Homo_sapiens 0 719
ENST00000529472 CHD7-007 processed_transcript Homo_sapiens 0 898
ENST00000531695 CHD7-008 retained_intron Homo_sapiens 0 359
ENST00000532149 CHD7-009 retained_intron Homo_sapiens 0 475
ENST00000555935 CHD8-004 protein_coding Homo_sapiens 0 957
ENST00000557364 CHD8-002 protein_coding Homo_sapiens 0 1044
ENST00000618450 CHD7-011 retained_intron Homo_sapiens 0 316

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