C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 9847
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052528 Gm9847-201 ENSMUSG00000050974 10090 + 12:14494561-14495157 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungOvaryPlacentaTestisENSMUST00000052528
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000052528 0.089±0.00 0.398±0.36 0.888±0.83 0.229±0.00 0.086±0.00 0.145±0.05 0.106±0.00 0.225±0.13 0.011±0.00 0.080±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 IEA regulation of cell growth
GO:0005131 IPI growth hormone receptor binding
GO:0005159 IEA insulin-like growth factor receptor binding
GO:0005737 IEA cytoplasm
GO:0007595 IGI lactation
GO:0008269 IEA JAK pathway signal transduction adaptor activity
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA:IMP intracellular signal transduction
GO:0040014 IMP regulation of multicellular organism growth
GO:0040015 IGI negative regulation of multicellular organism growth
GO:0045666 IDA positive regulation of neuron differentiation
GO:0046426 IEA:IGI negative regulation of JAK-STAT cascade
GO:0060749 IGI mammary gland alveolus development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340600 SOCS2-001 protein_coding Homo_sapiens 0 787
ENST00000444011 RP3-522J7.5-001 processed_pseudogene Homo_sapiens 4.06377e-44 182
ENST00000536696 SOCS2-007 protein_coding Homo_sapiens 0 787
ENST00000548091 SOCS2-008 protein_coding Homo_sapiens 0 569
ENST00000548537 SOCS2-005 protein_coding Homo_sapiens 0 630
ENST00000549122 SOCS2-006 protein_coding Homo_sapiens 0 787
ENST00000549206 SOCS2-002 protein_coding Homo_sapiens 0 787
ENST00000549510 SOCS2-013 protein_coding Homo_sapiens 9.99995e-41 171
ENST00000549887 SOCS2-009 protein_coding Homo_sapiens 0 619
ENST00000551556 SOCS2-011 protein_coding Homo_sapiens 0 787
ENST00000551883 SOCS2-012 protein_coding Homo_sapiens 0 279
ENST00000622746 SOCS2-201 protein_coding Homo_sapiens 0 787

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