C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of cytokine signaling 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000551556 SOCS2-011 ENSG00000120833 9606 + 12:93571906-93575306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLiverMuscleOvaryENST00000551556
Transcript ID Bladder Breast Kidney Liver Muscle Ovary
ENST00000551556 0.700±0.00 2.644±0.00 2.226±0.00 1.390±0.00 0.214±0.00 0.513±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 IEA:NAS regulation of cell growth
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005131 NAS growth hormone receptor binding
GO:0005159 IEA:IPI insulin-like growth factor receptor binding
GO:0005515 IPI protein binding
GO:0005737 IEA:NAS cytoplasm
GO:0005829 TAS cytosol
GO:0007259 TAS JAK-STAT cascade
GO:0008269 IEA JAK pathway signal transduction adaptor activity
GO:0009966 NAS regulation of signal transduction
GO:0009967 TAS positive regulation of signal transduction
GO:0016567 IEA protein ubiquitination
GO:0032355 IDA response to estradiol
GO:0032870 IDA cellular response to hormone stimulus
GO:0035556 IEA intracellular signal transduction
GO:0043066 TAS negative regulation of apoptotic process
GO:0046426 IEA negative regulation of JAK-STAT cascade
GO:0060396 IDA growth hormone receptor signaling pathway
GO:0060397 TAS JAK-STAT cascade involved in growth hormone signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119917 Socs2-008 protein_coding Mus_musculus 0 918
ENSMUST00000170690 Socs2-201 protein_coding Mus_musculus 0 891
ENSMUST00000020215 Socs2-001 protein_coding Mus_musculus 0 891
ENSMUST00000172070 Socs2-202 protein_coding Mus_musculus 0 889
ENSMUST00000052528 Gm9847-201 protein_coding Mus_musculus 0 787
ENSMUST00000188378 RP23-458B6.3-001 unprocessed_pseudogene Mus_musculus 0 658
ENSMUST00000134918 Socs2-009 processed_transcript Mus_musculus 0 649
ENSMUST00000139210 Socs2-002 nonsense_mediated_decay Mus_musculus 0 625
ENSMUST00000155148 Socs2-011 processed_transcript Mus_musculus 0 436
ENSMUST00000135822 Socs2-012 protein_coding Mus_musculus 0 420
ENSMUST00000150432 Socs2-007 protein_coding Mus_musculus 0 374
ENSMUST00000129942 Socs2-005 protein_coding Mus_musculus 0 337
ENSMUST00000128363 Socs2-004 processed_transcript Mus_musculus 0 246
ENSMUST00000128854 Socs2-010 processed_transcript Mus_musculus 1e-29 135
ENSMUST00000145847 Socs2-006 processed_transcript Mus_musculus 3e-25 121

Loading