C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of cytokine signaling 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000548537 SOCS2-005 ENSG00000120833 9606 + 12:93571704-93576206 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartKidneyMuscleOvaryTestisENST00000548537
Transcript ID Bladder Breast Heart Kidney Muscle Ovary Testis
ENST00000548537 0.251±0.00 0.942±0.24 0.086±0.00 0.587±0.00 0.176±0.00 0.236±0.02 0.702±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 IEA regulation of cell growth
GO:0005159 IEA insulin-like growth factor receptor binding
GO:0005737 IEA cytoplasm
GO:0008269 IEA JAK pathway signal transduction adaptor activity
GO:0035556 IEA intracellular signal transduction
GO:0046426 IEA negative regulation of JAK-STAT cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172070 Socs2-202 protein_coding Mus_musculus 0 651
ENSMUST00000170690 Socs2-201 protein_coding Mus_musculus 0 651
ENSMUST00000119917 Socs2-008 protein_coding Mus_musculus 0 651
ENSMUST00000020215 Socs2-001 protein_coding Mus_musculus 0 651
ENSMUST00000134918 Socs2-009 processed_transcript Mus_musculus 0 649
ENSMUST00000052528 Gm9847-201 protein_coding Mus_musculus 0 630
ENSMUST00000139210 Socs2-002 nonsense_mediated_decay Mus_musculus 0 625
ENSMUST00000188378 RP23-458B6.3-001 unprocessed_pseudogene Mus_musculus 0 547
ENSMUST00000155148 Socs2-011 processed_transcript Mus_musculus 0 436
ENSMUST00000129942 Socs2-005 protein_coding Mus_musculus 0 285
ENSMUST00000128363 Socs2-004 processed_transcript Mus_musculus 0 246
ENSMUST00000150432 Socs2-007 protein_coding Mus_musculus 0 246
ENSMUST00000135822 Socs2-012 protein_coding Mus_musculus 0 246
ENSMUST00000128854 Socs2-010 processed_transcript Mus_musculus 2e-29 135

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