C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: doublesex and mab-3 related transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053068 Dmrt2-201 ENSMUSG00000048138 10090 + 19:25672420-25679010 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053068
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053068 20.390±15.75 3.007±0.98 0.320±0.19 0.282±0.15 15.015±7.99 0.054±0.02 0.112±0.08 2.365±0.45 0.309±0.21 0.615±0.18 0.924±0.31 1.987±0.81 0.750±0.27 0.236±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UR CIL_0008UR_0002 VISTA 19:25304027-25904976
CIL_0008NH CIL_0008NH_0002 VISTA 19:25307278-25909178
CIL_0007KZ CIL_0007KZ_0002 UCNEbase 19:25568311-25924074
CIL_000644 CIL_000644_0003 CGP 19:25610537-25679010
CIL_000643 CIL_000643_0003 CGP 19:25672420-26778321

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 ISO nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0014807 IGI regulation of somitogenesis
GO:0042803 IDA protein homodimerization activity
GO:0043565 IDA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0048706 IMP embryonic skeletal system development
GO:2000287 IMP positive regulation of myotome development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259622 DMRT2-003 protein_coding Homo_sapiens 0 1314
ENST00000302441 DMRT2-201 protein_coding Homo_sapiens 0 1465
ENST00000358146 DMRT2-001 protein_coding Homo_sapiens 0 1857
ENST00000382251 DMRT2-202 protein_coding Homo_sapiens 0 1855
ENST00000382255 DMRT2-004 protein_coding Homo_sapiens 0 1306
ENST00000412350 DMRT2-002 protein_coding Homo_sapiens 0 547

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