C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008UR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs196 VISTA 9606 9:668797-1270093
GeneTranscriptPositionBiotype
ENSG00000064218 (DMRT3)
doublesex and mab-3 related transcription factor 3 		ENST00000190165 (DMRT3-001) 976964-991731 protein_coding
ENST00000417254 (DMRT3-002) 989837-990333 protein_coding
ENSG00000107104 (KANK1)
KN motif and ankyrin repeat domains 1 		ENST00000354485 (KANK1-002) 504703-734129 retained_intron
ENST00000382286 (KANK1-004) 734748-746104 protein_coding
ENST00000382289 (KANK1-003) 732442-746102 protein_coding
ENST00000382293 (KANK1-005) 706889-746103 protein_coding
ENST00000382297 (KANK1-007) 504716-746105 protein_coding
ENST00000382303 (KANK1-001) 470291-746105 protein_coding
ENST00000467541 (KANK1-008) 470592-484491 processed_transcript
ENST00000475690 (KANK1-000) 471467-476769 processed_transcript
ENST00000489369 (KANK1-006) 504702-746103 processed_transcript
ENST00000619269 (KANK1-201) 504695-746106 protein_coding
ENSG00000137090 (DMRT1)
doublesex and mab-3 related transcription factor 1 		ENST00000382276 (DMRT1-001) 841690-969090 protein_coding
ENST00000564322 (DMRT1-003) 841690-894985 retained_intron
ENST00000569227 (DMRT1-002) 842714-968515 protein_coding
ENSG00000173253 (DMRT2)
doublesex and mab-3 related transcription factor 2 		ENST00000259622 (DMRT2-003) 1051614-1057552 protein_coding
ENST00000302441 (DMRT2-201) 1051614-1057550 protein_coding
ENST00000358146 (DMRT2-001) 1051614-1057552 protein_coding
ENST00000382251 (DMRT2-202) 1050354-1057550 protein_coding
ENST00000382255 (DMRT2-004) 1050354-1057547 protein_coding
ENST00000412350 (DMRT2-002) 1050355-1055872 protein_coding
ENSG00000224836 (RP11-341G2.3)
 ENST00000443334 (RP11-341G2.3-001) 1151807-1152140 processed_pseudogene
ENSG00000227914 (RP11-130C19.3)
 ENST00000421645 (RP11-130C19.3-001) 673478-685555 antisense
ENST00000608097 (RP11-130C19.3-002) 674124-677628 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0008UR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs196 VISTA 10090 19:25304027-25904976
GeneTranscriptPositionBiotype
ENSMUSG00000024837 (Dmrt1)
doublesex and mab-3 related transcription factor 1 		ENSMUST00000025755 (Dmrt1-001) 25505618-25604329 protein_coding
ENSMUST00000087525 (Dmrt1-004) 25505706-25603491 protein_coding
ENSMUST00000160814 (Dmrt1-002) 25505707-25560265 processed_transcript
ENSMUSG00000032702 (Kank1)
KN motif and ankyrin repeat domains 1 		ENSMUST00000049400 (Kank1-001) 25236975-25434496 protein_coding
ENSMUST00000137260 (Kank1-003) 25395303-25409772 processed_transcript
ENSMUST00000146647 (Kank1-002) 25406699-25425984 protein_coding
ENSMUST00000155788 (Kank1-004) 25422239-25424508 retained_intron
ENSMUSG00000042372 (Dmrt3)
doublesex and mab-3 related transcription factor 3 		ENSMUST00000048935 (Dmrt3-201) 25610537-25623920 protein_coding
ENSMUSG00000048138 (Dmrt2)
doublesex and mab-3 related transcription factor 2 		ENSMUST00000053068 (Dmrt2-201) 25672420-25679010 protein_coding
ENSMUSG00000098105 (Gm8825)
predicted gene 8825 		ENSMUST00000182565 (Gm8825-001) 25795810-25796807 processed_pseudogene
ENSMUSG00000101089 (RP23-82C19.2)
RIKEN cDNA 2610016A17 gene 		ENSMUST00000185211 (RP23-82C19.2-001) 25671134-25672239 lincRNA
ENSMUST00000186768 (RP23-82C19.2-002) 25671565-25672253 lincRNA
ENSMUST00000188711 (RP23-82C19.2-003) 25671172-25672222 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008UR_0001ENSG00000064218ENST00000190165ENST00000417254ENSG00000107104ENST00000354485ENST00000382286ENST00000382289ENST00000382293ENST00000382297ENST00000382303ENST00000467541ENST00000475690ENST00000489369ENST00000619269ENSG00000137090ENST00000382276ENST00000564322ENST00000569227ENSG00000173253ENST00000259622ENST00000302441ENST00000358146ENST00000382251ENST00000382255ENST00000412350ENSG00000224836ENST00000443334ENSG00000227914ENST00000421645ENST00000608097CIL_0008UR_0002ENSMUSG00000024837ENSMUST00000025755ENSMUST00000087525ENSMUST00000160814ENSMUSG00000032702ENSMUST00000049400ENSMUST00000137260ENSMUST00000146647ENSMUST00000155788ENSMUSG00000042372ENSMUST00000048935ENSMUSG00000048138ENSMUST00000053068ENSMUSG00000098105ENSMUST00000182565ENSMUSG00000101089ENSMUST00000185211ENSMUST00000186768ENSMUST00000188711
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008UR_0001ENSG00000064218ENST00000190165ENST00000417254ENSG00000107104ENST00000354485ENST00000382286ENST00000382289ENST00000382293ENST00000382297ENST00000382303ENST00000489369ENST00000619269ENSG00000137090ENST00000382276ENST00000564322ENST00000569227ENSG00000173253ENST00000259622ENST00000302441ENST00000358146ENST00000382251ENST00000382255ENST00000412350ENSG00000224836ENST00000443334ENSG00000227914ENST00000421645ENST00000608097CIL_0008UR_0002ENSMUSG00000024837ENSMUST00000025755ENSMUST00000087525ENSMUST00000160814ENSMUSG00000032702ENSMUST00000049400ENSMUST00000137260ENSMUST00000146647ENSMUSG00000042372ENSMUST00000048935ENSMUSG00000048138ENSMUST00000053068ENSMUSG00000098105ENSMUST00000182565ENSMUSG00000101089ENSMUST00000185211ENSMUST00000186768ENSMUST00000188711
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000064218 ENST00000190165 0.775±0.00 0.800±0.00 N/A 0.295±0.20 0.669±0.49 0.117±0.00 0.022±0.00 N/A N/A 0.289±0.00 0.188±0.00 0.044±0.01 N/A 4.728±2.05
ENST00000417254 N/A N/A N/A 0.275±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000107104 ENST00000354485 N/A N/A 1.695±0.00 0.836±0.00 0.758±0.00 N/A 1.252±0.00 1.332±0.00 4.252±0.00 1.679±0.00 0.607±0.00 1.036±0.00 N/A N/A
ENST00000382286 N/A N/A N/A N/A N/A N/A N/A 7.130±0.00 5.439±0.00 N/A N/A 4.733±0.00 5.365±0.00 N/A
ENST00000382289 N/A 3.335±0.00 N/A N/A N/A 6.192±0.00 N/A N/A 8.240±0.00 2.589±0.00 N/A 5.585±0.00 N/A 11.019±0.00
ENST00000382293 3.182±0.00 1.252±0.00 1.478±0.00 1.506±0.00 10.613±0.00 2.934±0.00 N/A 3.338±0.00 N/A N/A N/A 2.127±0.53 2.184±0.36 N/A
ENST00000382297 8.043±0.00 3.205±0.00 3.148±0.00 3.048±1.61 14.595±11.76 5.280±0.00 18.790±12.92 7.022±1.13 5.617±1.74 2.784±1.32 5.028±3.02 4.939±2.91 15.349±12.38 7.124±1.24
ENST00000382303 N/A N/A 1.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.028±0.00 N/A N/A
ENST00000467541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489369 N/A 0.809±0.00 N/A 0.977±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619269 N/A N/A N/A 0.469±0.00 N/A N/A N/A N/A N/A N/A 2.013±0.00 3.518±0.00 N/A N/A
ENSG00000137090 ENST00000382276 N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.398±3.12
ENST00000564322 N/A 0.031±0.00 N/A 0.023±0.00 0.011±0.00 N/A 0.059±0.00 N/A N/A 0.009±0.00 0.036±0.00 0.010±0.00 N/A N/A
ENST00000569227 N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A 0.032±0.00 N/A N/A
ENSG00000173253 ENST00000259622 0.196±0.00 N/A N/A 0.147±0.07 0.145±0.01 0.239±0.00 N/A N/A N/A N/A N/A N/A N/A 0.073±0.00
ENST00000302441 N/A 0.086±0.00 N/A N/A N/A N/A 0.016±0.00 N/A N/A 0.096±0.00 0.055±0.00 0.084±0.00 N/A 0.338±0.00
ENST00000358146 0.841±0.00 N/A N/A 0.129±0.00 0.311±0.00 N/A N/A 6.442±0.00 N/A N/A N/A N/A N/A N/A
ENST00000382251 0.543±0.00 N/A N/A 0.424±0.00 0.699±0.00 0.239±0.00 N/A 3.214±0.00 0.156±0.00 0.729±0.00 0.266±0.00 0.028±0.00 N/A 0.084±0.00
ENST00000382255 N/A N/A N/A 0.056±0.00 N/A 0.098±0.00 N/A N/A N/A N/A 0.184±0.00 N/A N/A 0.330±0.00
ENST00000412350 0.869±0.00 N/A 3.510±0.00 0.553±0.33 N/A N/A 0.077±0.00 N/A N/A N/A 0.925±0.00 0.062±0.00 N/A N/A
ENSG00000224836 ENST00000443334 N/A N/A N/A N/A N/A N/A 1.163±0.00 N/A N/A N/A N/A N/A N/A 0.111±0.00
ENSG00000227914 ENST00000421645 0.046±0.00 0.070±0.00 N/A 0.045±0.03 N/A 0.182±0.00 0.065±0.00 N/A 0.109±0.00 0.271±0.00 N/A 0.203±0.18 N/A N/A
ENST00000608097 N/A N/A 1.861±0.00 N/A N/A N/A N/A N/A N/A 1.378±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024837 ENSMUST00000025755 N/A N/A 0.003±0.00 0.055±0.03 N/A N/A N/A N/A 0.008±0.00 N/A N/A 0.017±0.00 0.377±0.20 4.076±1.69
ENSMUST00000087525 N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A 0.059±0.00 N/A N/A
ENSMUST00000160814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A
ENSMUSG00000032702 ENSMUST00000049400 4.317±2.63 1.964±0.55 31.059±1.32 1.218±0.69 3.186±1.51 8.070±0.79 6.015±2.47 11.967±2.19 4.334±1.94 6.685±2.86 0.471±0.05 8.467±2.69 8.652±2.71 1.751±0.82
ENSMUST00000137260 N/A 5.154±0.00 N/A N/A 7.157±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146647 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.968±0.00 N/A 3.140±0.00 2.471±0.00 N/A
ENSMUST00000155788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042372 ENSMUST00000048935 0.030±0.01 N/A 0.018±0.01 0.722±0.73 0.017±0.01 0.013±0.00 0.164±0.04 0.022±0.00 0.013±0.01 0.280±0.12 N/A 0.024±0.00 0.285±0.19 0.339±0.12
ENSMUSG00000048138 ENSMUST00000053068 20.390±15.75 3.007±0.98 0.320±0.19 0.282±0.15 15.015±7.99 0.054±0.02 0.112±0.08 2.365±0.45 0.309±0.21 0.615±0.18 0.924±0.31 1.987±0.81 0.750±0.27 0.236±0.11
ENSMUSG00000098105 ENSMUST00000182565 0.094±0.08 0.086±0.02 0.114±0.00 0.021±0.01 0.303±0.35 0.077±0.02 0.059±0.02 0.138±0.14 0.055±0.03 0.034±0.00 0.107±0.07 0.134±0.00 0.048±0.01 0.092±0.00
ENSMUSG00000101089 ENSMUST00000185211 22.247±17.12 0.686±0.08 0.197±0.16 N/A 3.353±0.45 N/A 0.108±0.00 0.927±0.37 0.079±0.06 0.139±0.00 0.421±0.10 2.446±1.42 0.222±0.13 0.184±0.06
ENSMUST00000186768 N/A N/A 0.047±0.00 N/A N/A N/A N/A 0.192±0.10 0.051±0.05 N/A 0.118±0.02 0.118±0.00 N/A 0.056±0.00
ENSMUST00000188711 2.447±0.37 0.430±0.00 0.219±0.12 N/A 1.218±0.00 N/A 0.108±0.00 0.521±0.22 0.062±0.04 0.183±0.00 0.413±0.14 1.193±0.63 0.143±0.13 0.122±0.00

Loading