C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: doublesex and mab-3 related transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382251 DMRT2-202 ENSG00000173253 9606 + 9:1050354-1057550 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungMuscleOvaryTestisENST00000382251
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000382251 0.543±0.00 0.424±0.00 0.699±0.00 0.239±0.00 3.214±0.00 0.156±0.00 0.729±0.00 0.266±0.00 0.028±0.00 0.084±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UR CIL_0008UR_0001 VISTA 9:668797-1270093
CIL_0008NH CIL_0008NH_0001 VISTA 9:673435-1275288
CIL_0007KZ CIL_0007KZ_0001 UCNEbase 9:927217-1320417
CIL_000644 CIL_000644_0002 CGP 9:976964-1057552
CIL_000643 CIL_000643_0002 CGP 9:1050354-2193624

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0014807 IEA regulation of somitogenesis
GO:0042803 IEA protein homodimerization activity
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0048706 IEA embryonic skeletal system development
GO:2000287 IEA positive regulation of myotome development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053068 Dmrt2-201 protein_coding Mus_musculus 0 1855
ENSMUST00000061187 Dmrta2-001 protein_coding Mus_musculus 2e-33 148

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