C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scavenger receptor cysteine rich family, 4 domains
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054895 Srcrb4d-003 ENSMUSG00000029699 10090 - 5:135960224-135962327 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054895
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054895 2.267±0.74 1.387±0.44 1.001±0.10 0.606±0.18 2.242±0.32 1.816±0.83 0.370±0.15 1.417±0.36 1.585±0.51 0.664±0.21 0.507±0.08 1.601±0.51 2.099±1.14 0.196±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006E6 CIL_0006E6_0002 CGP 5:135908409-135974531
CIL_0006E7 CIL_0006E7_0002 CGP 5:135960211-135988624

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0006898 IEA receptor-mediated endocytosis
GO:0008150 ND biological_process
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000275560 SSC4D-001 protein_coding Homo_sapiens 0 457
ENST00000492979 SSC4D-003 processed_transcript Homo_sapiens 0 455

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