C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006E6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170027-ENSG00000146700 CGP 9606 7:76326794-76409695
GeneTranscriptPositionBiotype
ENSG00000146700 (SSC4D)
scavenger receptor cysteine rich family, 4 domains 		ENST00000275560 (SSC4D-001) 76389334-76409695 protein_coding
ENST00000492979 (SSC4D-003) 76389334-76393490 processed_transcript
ENSG00000170027 (YWHAG)
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 		ENST00000307630 (YWHAG-001) 76326794-76359031 protein_coding
ENSG00000188372 (ZP3)
zona pellucida glycoprotein 3 (sperm receptor) 		ENST00000336517 (ZP3-002) 76397518-76442071 protein_coding
ENST00000394857 (ZP3-001) 76424907-76442071 protein_coding
ENST00000394860 (ZP3-008) 76433470-76442063 protein_coding
ENST00000416245 (ZP3-003) 76428638-76442062 protein_coding
ENST00000466960 (ZP3-004) 76433956-76442071 retained_intron
ENST00000467555 (ZP3-005) 76439898-76442071 processed_transcript
ENST00000479793 (ZP3-007) 76434035-76442071 processed_transcript
ENSG00000213548 (AC005522.6)
 ENST00000395416 (AC005522.6-001) 76361768-76362113 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0006E6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051391-ENSMUSG00000029699 CGP 10090 5:135908409-135974531
GeneTranscriptPositionBiotype
ENSMUSG00000029699 (Srcrb4d)
scavenger receptor cysteine rich family, 4 domains 		ENSMUST00000054895 (Srcrb4d-003) 135960224-135962327 protein_coding
ENSMUST00000111150 (Srcrb4d-004) 135960822-135962271 protein_coding
ENSMUST00000111152 (Srcrb4d-001) 135960223-135974497 protein_coding
ENSMUST00000111153 (Srcrb4d-002) 135960211-135974531 protein_coding
ENSMUST00000153823 (Srcrb4d-007) 135963212-135965874 protein_coding
ENSMUST00000154181 (Srcrb4d-005) 135966139-135974440 protein_coding
ENSMUST00000154696 (Srcrb4d-006) 135963422-135967920 protein_coding
ENSMUSG00000051391 (Ywhag)
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 		ENSMUST00000055808 (Ywhag-001) 135908409-135934599 protein_coding
ENSMUST00000126192 (Ywhag-004) 135930761-135934550 processed_transcript
ENSMUST00000126639 (Ywhag-003) 135930685-135934616 processed_transcript
ENSMUST00000129581 (Ywhag-002) 135930680-135934597 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006E6_0001ENSG00000146700ENST00000275560ENST00000492979ENSG00000170027ENST00000307630ENSG00000188372ENST00000336517ENST00000394857ENST00000394860ENST00000416245ENST00000466960ENST00000467555ENST00000479793ENSG00000213548ENST00000395416CIL_0006E6_0002ENSMUSG00000029699ENSMUST00000054895ENSMUST00000111150ENSMUST00000111152ENSMUST00000111153ENSMUST00000153823ENSMUST00000154181ENSMUST00000154696ENSMUSG00000051391ENSMUST00000055808ENSMUST00000126192ENSMUST00000126639ENSMUST00000129581
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006E6_0001ENSG00000146700ENST00000275560ENST00000492979ENSG00000170027ENST00000307630ENSG00000188372ENST00000336517ENST00000394857ENST00000394860ENST00000416245ENST00000467555ENSG00000213548ENST00000395416CIL_0006E6_0002ENSMUSG00000029699ENSMUST00000054895ENSMUST00000111150ENSMUST00000111152ENSMUST00000111153ENSMUSG00000051391ENSMUST00000055808
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146700 ENST00000275560 0.150±0.00 N/A 0.278±0.00 N/A 0.988±0.00 N/A 0.041±0.00 2.074±0.00 N/A N/A N/A 1.200±1.28 0.090±0.03 0.246±0.00
ENST00000492979 0.363±0.00 N/A N/A 0.325±0.15 3.574±0.00 0.192±0.00 0.210±0.17 1.381±0.00 2.002±0.00 0.223±0.00 0.572±0.00 1.822±0.28 0.371±0.03 0.840±0.26
ENSG00000170027 ENST00000307630 86.505±0.00 43.300±0.00 1.890±0.00 186.197±102.17 104.798±90.67 31.488±19.41 41.696±29.99 26.647±17.66 19.975±2.91 31.469±19.37 68.071±53.57 40.408±14.47 36.803±0.35 31.149±14.75
ENSG00000188372 ENST00000336517 0.488±0.00 0.717±0.00 N/A 0.207±0.00 1.419±0.00 0.693±0.00 N/A 0.641±0.00 N/A 0.056±0.00 N/A 1.155±0.75 0.485±0.15 0.297±0.00
ENST00000394857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.969±0.00 0.618±0.00
ENST00000394860 N/A N/A N/A N/A N/A 0.204±0.00 N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A
ENST00000416245 N/A 0.630±0.00 N/A 0.466±0.00 N/A 0.180±0.00 0.032±0.00 N/A N/A 0.151±0.00 N/A N/A N/A 0.452±0.00
ENST00000466960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467555 1.690±0.00 2.667±0.00 N/A 0.547±0.00 9.780±0.00 N/A N/A N/A N/A N/A 0.467±0.00 N/A N/A N/A
ENST00000479793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213548 ENST00000395416 N/A 0.096±0.00 N/A 0.051±0.00 N/A 0.045±0.00 N/A 0.096±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029699 ENSMUST00000054895 2.267±0.74 1.387±0.44 1.001±0.10 0.606±0.18 2.242±0.32 1.816±0.83 0.370±0.15 1.417±0.36 1.585±0.51 0.664±0.21 0.507±0.08 1.601±0.51 2.099±1.14 0.196±0.04
ENSMUST00000111150 3.071±0.00 4.066±0.71 N/A N/A 2.957±1.23 2.298±0.00 0.466±0.00 0.831±0.00 1.503±0.28 0.919±0.17 0.638±0.14 2.657±0.00 2.094±0.00 0.292±0.09
ENSMUST00000111152 N/A N/A N/A 0.138±0.00 N/A N/A 0.026±0.00 N/A N/A N/A N/A 0.413±0.03 N/A 0.018±0.00
ENSMUST00000111153 0.268±0.00 0.760±0.20 0.211±0.00 0.191±0.12 N/A 0.212±0.04 0.024±0.00 0.199±0.00 N/A 0.118±0.00 N/A 0.893±0.58 0.149±0.05 0.041±0.02
ENSMUST00000153823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051391 ENSMUST00000055808 123.311±39.06 144.078±7.85 30.289±4.08 117.135±40.60 93.928±21.83 26.914±1.15 41.917±4.51 23.833±1.29 22.063±2.99 38.985±1.02 80.302±2.50 55.513±11.64 53.443±26.96 6.062±2.68
ENSMUST00000126192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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