C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006E7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000146700-ENSG00000188372 CGP 9606 7:76389334-76442071
GeneTranscriptPositionBiotype
ENSG00000146700 (SSC4D)
scavenger receptor cysteine rich family, 4 domains 		ENST00000275560 (SSC4D-001) 76389334-76409695 protein_coding
ENST00000492979 (SSC4D-003) 76389334-76393490 processed_transcript
ENSG00000188372 (ZP3)
zona pellucida glycoprotein 3 (sperm receptor) 		ENST00000336517 (ZP3-002) 76397518-76442071 protein_coding
ENST00000394857 (ZP3-001) 76424907-76442071 protein_coding
ENST00000394860 (ZP3-008) 76433470-76442063 protein_coding
ENST00000416245 (ZP3-003) 76428638-76442062 protein_coding
ENST00000466960 (ZP3-004) 76433956-76442071 retained_intron
ENST00000467555 (ZP3-005) 76439898-76442071 processed_transcript
ENST00000479793 (ZP3-007) 76434035-76442071 processed_transcript
CIL_0006E7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029699-ENSMUSG00000004948 CGP 10090 5:135960211-135988624
GeneTranscriptPositionBiotype
ENSMUSG00000004948 (Zp3)
zona pellucida glycoprotein 3 		ENSMUST00000005073 (Zp3-001) 135980099-135988624 protein_coding
ENSMUST00000131563 (Zp3-002) 135980168-135987292 nonsense_mediated_decay
ENSMUSG00000029699 (Srcrb4d)
scavenger receptor cysteine rich family, 4 domains 		ENSMUST00000054895 (Srcrb4d-003) 135960224-135962327 protein_coding
ENSMUST00000111150 (Srcrb4d-004) 135960822-135962271 protein_coding
ENSMUST00000111152 (Srcrb4d-001) 135960223-135974497 protein_coding
ENSMUST00000111153 (Srcrb4d-002) 135960211-135974531 protein_coding
ENSMUST00000153823 (Srcrb4d-007) 135963212-135965874 protein_coding
ENSMUST00000154181 (Srcrb4d-005) 135966139-135974440 protein_coding
ENSMUST00000154696 (Srcrb4d-006) 135963422-135967920 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006E7_0001ENSG00000146700ENST00000275560ENST00000492979ENSG00000188372ENST00000336517ENST00000394857ENST00000394860ENST00000416245ENST00000466960ENST00000467555ENST00000479793CIL_0006E7_0002ENSMUSG00000004948ENSMUST00000005073ENSMUST00000131563ENSMUSG00000029699ENSMUST00000054895ENSMUST00000111150ENSMUST00000111152ENSMUST00000111153ENSMUST00000153823ENSMUST00000154181ENSMUST00000154696
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006E7_0001ENSG00000146700ENST00000275560ENST00000492979ENSG00000188372ENST00000336517ENST00000394857ENST00000394860ENST00000416245ENST00000467555CIL_0006E7_0002ENSMUSG00000004948ENSMUST00000005073ENSMUST00000131563ENSMUSG00000029699ENSMUST00000054895ENSMUST00000111150ENSMUST00000111152ENSMUST00000111153
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146700 ENST00000275560 0.150±0.00 N/A 0.278±0.00 N/A 0.988±0.00 N/A 0.041±0.00 2.074±0.00 N/A N/A N/A 1.200±1.28 0.090±0.03 0.246±0.00
ENST00000492979 0.363±0.00 N/A N/A 0.325±0.15 3.574±0.00 0.192±0.00 0.210±0.17 1.381±0.00 2.002±0.00 0.223±0.00 0.572±0.00 1.822±0.28 0.371±0.03 0.840±0.26
ENSG00000188372 ENST00000336517 0.488±0.00 0.717±0.00 N/A 0.207±0.00 1.419±0.00 0.693±0.00 N/A 0.641±0.00 N/A 0.056±0.00 N/A 1.155±0.75 0.485±0.15 0.297±0.00
ENST00000394857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.969±0.00 0.618±0.00
ENST00000394860 N/A N/A N/A N/A N/A 0.204±0.00 N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A
ENST00000416245 N/A 0.630±0.00 N/A 0.466±0.00 N/A 0.180±0.00 0.032±0.00 N/A N/A 0.151±0.00 N/A N/A N/A 0.452±0.00
ENST00000466960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467555 1.690±0.00 2.667±0.00 N/A 0.547±0.00 9.780±0.00 N/A N/A N/A N/A N/A 0.467±0.00 N/A N/A N/A
ENST00000479793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004948 ENSMUST00000005073 0.031±0.01 0.033±0.00 N/A 0.051±0.02 0.022±0.00 N/A 0.030±0.02 0.027±0.01 0.017±0.01 0.054±0.01 N/A 64.958±27.23 0.026±0.01 0.329±0.18
ENSMUST00000131563 N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A 0.053±0.00
ENSMUSG00000029699 ENSMUST00000054895 2.267±0.74 1.387±0.44 1.001±0.10 0.606±0.18 2.242±0.32 1.816±0.83 0.370±0.15 1.417±0.36 1.585±0.51 0.664±0.21 0.507±0.08 1.601±0.51 2.099±1.14 0.196±0.04
ENSMUST00000111150 3.071±0.00 4.066±0.71 N/A N/A 2.957±1.23 2.298±0.00 0.466±0.00 0.831±0.00 1.503±0.28 0.919±0.17 0.638±0.14 2.657±0.00 2.094±0.00 0.292±0.09
ENSMUST00000111152 N/A N/A N/A 0.138±0.00 N/A N/A 0.026±0.00 N/A N/A N/A N/A 0.413±0.03 N/A 0.018±0.00
ENSMUST00000111153 0.268±0.00 0.760±0.20 0.211±0.00 0.191±0.12 N/A 0.212±0.04 0.024±0.00 0.199±0.00 N/A 0.118±0.00 N/A 0.893±0.58 0.149±0.05 0.041±0.02
ENSMUST00000153823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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