C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fibronectin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055226 Fn1-001 ENSMUSG00000026193 10090 - 1:71585524-71653175 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverOvaryPlacentaTestisENSMUST00000055226
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Ovary Placenta Testis
ENSMUST00000055226 38.464±27.25 1.489±0.32 30.810±3.31 13.504±1.71 37.106±7.22 14.402±1.17 9.095±2.31 20.011±4.72 39.445±0.00 1.085±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MI CIL_0005MI_0002 CGP 1:71557150-71653200
CIL_0005MJ CIL_0005MJ_0002 CGP 1:71585520-72212307

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0002020 IEA protease binding
GO:0005178 IEA integrin binding
GO:0005515 IPI protein binding
GO:0005577 IEA fibrinogen complex
GO:0005578 TAS proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005605 IDA basal lamina
GO:0005615 IEA extracellular space
GO:0005793 IEA endoplasmic reticulum-Golgi intermediate compartment
GO:0006953 IEA acute-phase response
GO:0007044 IDA cell-substrate junction assembly
GO:0007155 IDA cell adhesion
GO:0007160 IDA cell-matrix adhesion
GO:0007161 IDA calcium-independent cell-matrix adhesion
GO:0008201 IEA heparin binding
GO:0008360 IEA regulation of cell shape
GO:0010952 IDA positive regulation of peptidase activity
GO:0016324 IDA apical plasma membrane
GO:0016504 IDA peptidase activator activity
GO:0018149 IEA peptide cross-linking
GO:0031012 IDA extracellular matrix
GO:0033622 IEA integrin activation
GO:0034446 IEA substrate adhesion-dependent cell spreading
GO:0035987 IEA endodermal cell differentiation
GO:0042060 IMP wound healing
GO:0045773 IDA positive regulation of axon extension
GO:0070062 IEA extracellular vesicular exosome
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000023692 fn1b-201 protein_coding Danio_rerio 0 235
ENSDART00000103754 fn1b-003 retained_intron Danio_rerio 0 235
ENSDART00000103755 fn1b-001 protein_coding Danio_rerio 0 235
ENST00000323926 FN1-002 protein_coding Homo_sapiens 0 7553
ENST00000336916 FN1-003 protein_coding Homo_sapiens 0 4248
ENST00000354785 FN1-001 protein_coding Homo_sapiens 0 8957
ENST00000356005 FN1-013 protein_coding Homo_sapiens 0 4248
ENST00000357867 FN1-004 protein_coding Homo_sapiens 0 4248
ENST00000359671 FN1-201 protein_coding Homo_sapiens 0 4265
ENST00000421182 FN1-005 protein_coding Homo_sapiens 0 4248
ENST00000426059 FN1-014 protein_coding Homo_sapiens 0 2296
ENST00000432072 FN1-012 protein_coding Homo_sapiens 0 5792
ENST00000438981 FN1-026 protein_coding Homo_sapiens 0 455
ENST00000443816 FN1-009 protein_coding Homo_sapiens 0 4248
ENST00000446046 FN1-008 protein_coding Homo_sapiens 0 4248
ENST00000456923 FN1-011 protein_coding Homo_sapiens 0 2484
ENST00000460217 FN1-025 retained_intron Homo_sapiens 0 460
ENST00000461974 FN1-022 retained_intron Homo_sapiens 0 364
ENST00000474036 FN1-027 retained_intron Homo_sapiens 0 1051
ENST00000485567 FN1-023 retained_intron Homo_sapiens 0 638
ENST00000490833 FN1-028 processed_transcript Homo_sapiens 0 553
ENST00000492816 FN1-007 retained_intron Homo_sapiens 0 1325
ENST00000494446 FN1-017 retained_intron Homo_sapiens 0 603
ENST00000498719 FN1-010 retained_intron Homo_sapiens 0 571

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