C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fibronectin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000456923 FN1-011 ENSG00000115414 9606 - 2:215361147-215393147 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000456923
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000456923 18.572±0.00 18.413±0.00 2.637±0.00 28.653±0.00 69.468±0.00 17.078±0.00 22.346±0.00 89.263±0.00 254.989±0.00 3.477±0.25 71.709±43.96 2232.314±1116.58 17.480±9.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MI CIL_0005MI_0001 CGP 2:215311817-215436172
CIL_0005MJ CIL_0005MJ_0001 CGP 2:215360440-216034096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186129 Fn1-002 protein_coding Mus_musculus 0 3581
ENSMUST00000055226 Fn1-001 protein_coding Mus_musculus 0 2484
ENSMUST00000188894 Fn1-003 protein_coding Mus_musculus 0 2484
ENSMUST00000190780 Fn1-008 protein_coding Mus_musculus 0 2047
ENSMUST00000189821 Fn1-006 protein_coding Mus_musculus 0 2047
ENSMUST00000185408 Fn1-012 retained_intron Mus_musculus 0 1659
ENSMUST00000187938 Fn1-007 protein_coding Mus_musculus 0 1421
ENSMUST00000189160 Fn1-011 retained_intron Mus_musculus 0 1099
ENSMUST00000188674 Fn1-005 protein_coding Mus_musculus 0 1099
ENSMUST00000187627 Fn1-017 nonsense_mediated_decay Mus_musculus 0 693
ENSMUST00000186985 Fn1-016 nonsense_mediated_decay Mus_musculus 0 654
ENSMUST00000186575 Fn1-018 retained_intron Mus_musculus 0 401

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