C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fibronectin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000492816 FN1-007 ENSG00000115414 9606 - 2:215360862-215393721 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MI CIL_0005MI_0001 CGP 2:215311817-215436172
CIL_0005MJ CIL_0005MJ_0001 CGP 2:215360440-216034096

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000188894 Fn1-003 protein_coding Mus_musculus 0 1328
ENSMUST00000187938 Fn1-007 protein_coding Mus_musculus 0 1327
ENSMUST00000189821 Fn1-006 protein_coding Mus_musculus 0 1327
ENSMUST00000188674 Fn1-005 protein_coding Mus_musculus 0 1327
ENSMUST00000186129 Fn1-002 protein_coding Mus_musculus 0 1325
ENSMUST00000055226 Fn1-001 protein_coding Mus_musculus 0 1325
ENSMUST00000190780 Fn1-008 protein_coding Mus_musculus 0 1325
ENSMUST00000185408 Fn1-012 retained_intron Mus_musculus 0 1321
ENSMUST00000187627 Fn1-017 nonsense_mediated_decay Mus_musculus 0 693
ENSMUST00000186985 Fn1-016 nonsense_mediated_decay Mus_musculus 0 654
ENSMUST00000189160 Fn1-011 retained_intron Mus_musculus 0 614
ENSMUST00000186575 Fn1-018 retained_intron Mus_musculus 0 401
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.0000003 64

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