C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fibronectin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446046 FN1-008 ENSG00000115414 9606 - 2:215360862-215436068 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000446046
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000446046 12.563±0.00 15.248±0.00 5.434±4.30 14.160±2.10 29.961±20.23 10.041±0.00 17.150±0.00 41.913±3.03 101.636±79.13 27.257±12.63 1170.402±605.46 8.003±6.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MI CIL_0005MI_0001 CGP 2:215311817-215436172
CIL_0005MJ CIL_0005MJ_0001 CGP 2:215360440-216034096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0002020 IPI protease binding
GO:0002576 TAS platelet degranulation
GO:0005178 IDA integrin binding
GO:0005515 IPI:IEA protein binding
GO:0005518 NAS collagen binding
GO:0005576 NAS:IEA extracellular region
GO:0005577 IDA fibrinogen complex
GO:0005615 IDA extracellular space
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0006953 IEA acute-phase response
GO:0007155 NAS cell adhesion
GO:0007596 TAS blood coagulation
GO:0008201 NAS heparin binding
GO:0008360 IEA regulation of cell shape
GO:0009611 NAS response to wounding
GO:0018149 IDA peptide cross-linking
GO:0022617 TAS extracellular matrix disassembly
GO:0030168 TAS platelet activation
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0031093 TAS platelet alpha granule lumen
GO:0033622 IMP integrin activation
GO:0034446 IDA substrate adhesion-dependent cell spreading
GO:0035987 IDA endodermal cell differentiation
GO:0050900 TAS leukocyte migration
GO:0070062 IDA extracellular vesicular exosome
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000187938 Fn1-007 protein_coding Mus_musculus 0 6983
ENSMUST00000188674 Fn1-005 protein_coding Mus_musculus 0 6745
ENSMUST00000188894 Fn1-003 protein_coding Mus_musculus 0 6745
ENSMUST00000186129 Fn1-002 protein_coding Mus_musculus 0 5347
ENSMUST00000190780 Fn1-008 protein_coding Mus_musculus 0 5347
ENSMUST00000189821 Fn1-006 protein_coding Mus_musculus 0 5347
ENSMUST00000055226 Fn1-001 protein_coding Mus_musculus 0 4248
ENSMUST00000189160 Fn1-011 retained_intron Mus_musculus 0 2001
ENSMUST00000185408 Fn1-012 retained_intron Mus_musculus 0 1321
ENSMUST00000186940 Fn1-010 protein_coding Mus_musculus 0 1279
ENSMUST00000186879 Fn1-009 retained_intron Mus_musculus 0 1059
ENSMUST00000186985 Fn1-016 nonsense_mediated_decay Mus_musculus 0 654
ENSMUST00000187627 Fn1-017 nonsense_mediated_decay Mus_musculus 0 529
ENSMUST00000186736 Fn1-013 protein_coding Mus_musculus 0 412
ENSMUST00000186575 Fn1-018 retained_intron Mus_musculus 0 401

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