C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059272 Hoxd9-001 ENSMUSG00000043342 10090 + 2:74697727-74700208 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059272
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059272 15.533±11.58 2.288±1.22 5.904±0.42 0.078±0.05 2.757±0.56 0.916±0.37 0.064±0.02 11.192±3.77 0.012±0.01 0.220±0.07 9.038±1.15 12.575±6.87 1.799±0.89 0.824±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_00017O CIL_00017O_0002 CGP 2:74691924-74700208
CIL_00017L CIL_00017L_0002 CGP 2:74697727-74707933

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007338 IGI single fertilization
GO:0007519 IGI skeletal muscle tissue development
GO:0008344 IGI adult locomotory behavior
GO:0009952 IGI anterior/posterior pattern specification
GO:0009954 IGI proximal/distal pattern formation
GO:0010468 IGI regulation of gene expression
GO:0030879 IGI mammary gland development
GO:0035115 IGI embryonic forelimb morphogenesis
GO:0035136 IGI forelimb morphogenesis
GO:0035137 IGI hindlimb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development
GO:0048935 IGI peripheral nervous system neuron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127384 hoxc9a-001 protein_coding Danio_rerio 8.00001e-42 176
ENSDART00000053295 hoxc10a-201 protein_coding Danio_rerio 2e-38 165
ENST00000249499 HOXD9-001 protein_coding Homo_sapiens 0 1576
ENST00000311177 HOXB9-001 protein_coding Homo_sapiens 0 215
ENST00000613849 HOXD9-201 protein_coding Homo_sapiens 0 1330

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