C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311177 HOXB9-001 ENSG00000170689 9606 - 17:48621159-48626356 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLungOvaryPlacentaTestisENST00000311177
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000311177 0.316±0.00 1.561±0.00 1.486±0.00 0.315±0.15 3.380±1.16 7.259±7.19 0.015±0.00 0.991±0.71 0.757±0.34 3.103±2.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IEA anterior/posterior pattern specification
GO:0030879 IEA mammary gland development
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048706 IEA embryonic skeletal system development
GO:0060070 IMP canonical Wnt signaling pathway
GO:0060326 IDA cell chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000010 Hoxb9-001 protein_coding Mus_musculus 0 1389
ENSMUST00000174042 Hoxb9-002 protein_coding Mus_musculus 0 457
ENSDART00000023674 hoxb9a-001 protein_coding Danio_rerio 0 241
ENSMUST00000059272 Hoxd9-001 protein_coding Mus_musculus 0 215
ENSDART00000006479 hoxb9a-201 protein_coding Danio_rerio 0 198
ENSMUST00000142312 Hoxd11-001 protein_coding Mus_musculus 0.00000002 66
ENSMUST00000048086 Hoxd11-002 processed_transcript Mus_musculus 0.00000002 66

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