C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000249499 HOXD9-001 ENSG00000128709 9606 + 2:176122720-176124937 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249499
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249499 8.720±0.00 8.508±0.00 1.871±0.00 5.134±4.78 7.380±0.00 0.078±0.06 19.216±0.00 0.102±0.07 0.423±0.00 0.401±0.16 8.951±4.00 1.150±0.31 12.395±3.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_00017O CIL_00017O_0001 CGP 2:176108790-176124937
CIL_00017L CIL_00017L_0001 CGP 2:176122720-176132695

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007338 IEA single fertilization
GO:0007519 IEA skeletal muscle tissue development
GO:0008344 IEA adult locomotory behavior
GO:0009952 IEA anterior/posterior pattern specification
GO:0009954 IEA proximal/distal pattern formation
GO:0010468 IEA regulation of gene expression
GO:0030879 IEA mammary gland development
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0035136 IEA forelimb morphogenesis
GO:0035137 IEA hindlimb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development
GO:0048935 IEA peripheral nervous system neuron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059272 Hoxd9-001 protein_coding Mus_musculus 0 1576
ENSMUST00000000010 Hoxb9-001 protein_coding Mus_musculus 0 215
ENSMUST00000174042 Hoxb9-002 protein_coding Mus_musculus 0 213
ENSMUST00000142312 Hoxd11-001 protein_coding Mus_musculus 0.0000002 62
ENSMUST00000048086 Hoxd11-002 processed_transcript Mus_musculus 0.0000002 62

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