C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulator of calcineurin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060005 Rcan1-202 ENSMUSG00000022951 10090 - 16:92391953-92466146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060005
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060005 6.513±1.72 3.986±0.51 6.729±0.61 16.323±4.95 6.079±1.09 8.054±0.64 8.932±0.49 4.323±0.60 3.123±1.19 6.327±1.01 12.715±1.87 4.602±2.05 8.082±2.14 2.149±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ON CIL_0008ON_0002 VISTA 16:92040534-92642015
CIL_0007SX CIL_0007SX_0002 VISTA 16:92042784-92648394
CIL_0008OM CIL_0008OM_0002 VISTA 16:92044467-92645647
CIL_0008ZS CIL_0008ZS_0002 VISTA 16:92110151-92716672
CIL_00094R CIL_00094R_0002 VISTA 16:92127453-92730131
CIL_00078G CIL_00078G_0002 CGP 16:92346001-92466146

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002931 IMP response to ischemia
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006979 IGI response to oxidative stress
GO:0007519 IEA skeletal muscle tissue development
GO:0007614 IGI short-term memory
GO:0009612 IEA response to mechanical stimulus
GO:0031987 IGI locomotion involved in locomotory behavior
GO:0033173 IGI calcineurin-NFAT signaling cascade
GO:0043627 IEA response to estrogen
GO:0043666 IDA regulation of phosphoprotein phosphatase activity
GO:0048741 IDA skeletal muscle fiber development
GO:0051151 IEA negative regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313806 RCAN1-001 protein_coding Homo_sapiens 0 1051
ENST00000381132 RCAN1-003 protein_coding Homo_sapiens 0 776
ENST00000381135 RCAN1-201 protein_coding Homo_sapiens 0 774
ENST00000399272 RCAN1-004 protein_coding Homo_sapiens 0 773
ENST00000443408 RCAN1-202 protein_coding Homo_sapiens 0 776
ENST00000463276 RCAN1-009 processed_transcript Homo_sapiens 0 279
ENST00000481448 RCAN1-005 protein_coding Homo_sapiens 0 774
ENST00000482533 RCAN1-006 protein_coding Homo_sapiens 0 774
ENST00000487434 RCAN1-008 processed_transcript Homo_sapiens 2e-20 102
ENST00000487990 RCAN1-010 protein_coding Homo_sapiens 0 774
ENST00000489903 RCAN1-002 processed_transcript Homo_sapiens 0 776
ENST00000492600 RCAN1-007 protein_coding Homo_sapiens 0 420
ENST00000609325 RCAN1-011 retained_intron Homo_sapiens 0 209
ENST00000620920 RCAN1-203 protein_coding Homo_sapiens 0 773

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