C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin-related protein T2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060062 Actrt2-001 ENSMUSG00000051276 10090 - 4:154666433-154667867 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLungTestisENSMUST00000060062
Transcript ID Breast Heart Kidney Lung Testis
ENSMUST00000060062 0.031±0.00 0.131±0.07 0.039±0.01 0.028±0.00 296.758±62.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099V CIL_00099V_0002 VISTA 4:154093365-154697126
CIL_0007TB CIL_0007TB_0002 VISTA 4:154156294-154757167
CIL_0007XZ CIL_0007XZ_0002 VISTA 4:154471105-155072345

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0.0000002 62
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0.00000001 66
ENST00000371124 ACTRT1-001 protein_coding Homo_sapiens 0 542
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0.00000002 66
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0.00000001 66
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0.0000004 60
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0.00000002 66
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0.0000004 60

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