C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000512165 CH17-12M21.1-001 ENSG00000176183 9606 + 5:98338744-98339832 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000512165
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000512165 0.819±0.00 0.346±0.00 0.474±0.00 0.383±0.00 0.710±0.00 0.092±0.00 0.234±0.00 0.090±0.00 0.182±0.00 0.120±0.00 0.071±0.00 0.225±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 889
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 767
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 767
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 767
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 715
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 715
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 710
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 704
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 702
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 641
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 640
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 634
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 604
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 597
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 584
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 562
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 540
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 529
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 527
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 514
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 494
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 494
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 492
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 488
ENSDART00000080664 protein_coding Danio_rerio 0 486
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 464
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 449
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 444
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 401
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 385
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 363
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 298
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 294
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 259
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 243
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 243
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 231
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 215
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 3.99931e-42 176
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 7e-40 169
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 2e-20 104
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 2e-20 104
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 2e-20 104
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 2e-20 104
ENSMUST00000060062 Actrt2-001 protein_coding Mus_musculus 0.0000004 60

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