C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha 1b, skeletal muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000058629 acta1b-001 ENSDARG00000055618 7955 + 13:24502911-24508332 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000058629
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000058629 2.285±2.09 2557.760±552.42 3.384±2.80 7.800±0.00 150.844±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0035050 IMP embryonic heart tube development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1378
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 1192
ENSMUST00000060062 Actrt2-001 protein_coding Mus_musculus 0.0000002 62
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 303
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1013
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 1037
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 817
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 953
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 211
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 1223
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 339
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1059
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1013
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 418
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 811
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 797
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1024
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 1037
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 544
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 625
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 649
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 344
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 745
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 189
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 649
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 649
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 649
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 348
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 3.9937e-43 178
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 274
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 326
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 324
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 743
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 723
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 353
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 614
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 1155
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 1327
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1094
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1027
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1103
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 935
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 907
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 525
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 1229
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 946
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 913
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1103
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 894
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 907
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 590
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 645
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 279
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 883
ENST00000417985 ACTBP1-001 processed_pseudogene Homo_sapiens 0 667
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 754
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 675
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 418
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 691
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 348
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 457
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 747
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 547
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 654
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 490
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 811
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 894
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 241
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 425
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 291
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 839
ENST00000450208 RP11-193H5.2-001 transcribed_processed_pseudogene Homo_sapiens 0 516
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 929
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 732
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 1155
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 747
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 257
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 0 466
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 499
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 274
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 835
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 789
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 568
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 638
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 562
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 905
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 0 270
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 383
ENST00000557860 ACTC1-003 processed_transcript Homo_sapiens 0 568
ENST00000560563 ACTC1-004 retained_intron Homo_sapiens 0 355
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 303
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 545
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 303
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 579
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 440
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1027
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1027
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 549
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1027
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 553
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 961
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 322
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1027
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 723
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1027

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