C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dead end homolog 1 (zebrafish)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061522 Dnd1-001 ENSMUSG00000044595 10090 - 18:36763673-36766198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungOvaryTestisENSMUST00000061522
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Ovary Testis
ENSMUST00000061522 10.082±1.79 2.047±0.38 1.346±0.22 1.232±0.20 1.818±0.42 0.719±0.24 1.283±0.25 6.143±1.31 1.112±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZH CIL_0006ZH_0002 CGP 18:36744656-36763708
CIL_0006ZK CIL_0006ZK_0002 CGP 18:36760239-36766214
CIL_0006ZJ CIL_0006ZJ_0002 CGP 18:36763671-36783205

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0007281 IMP germ cell development
GO:0017091 ISS AU-rich element binding
GO:0060965 ISS negative regulation of gene silencing by miRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358337 WDR55-001 protein_coding Homo_sapiens 0 501
ENST00000504156 HARS-001 protein_coding Homo_sapiens 9.99967e-42 176
ENST00000504897 WDR55-004 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000506393 WDR55-003 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000511232 WDR55-002 retained_intron Homo_sapiens 0 460
ENST00000520764 WDR55-006 processed_transcript Homo_sapiens 0 460
ENST00000542735 DND1-001 protein_coding Homo_sapiens 0 1114
ENST00000571422 RP11-259G18.3-001 processed_pseudogene Homo_sapiens 0 893
ENST00000580842 DND1P1-001 processed_pseudogene Homo_sapiens 0 948

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