C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain 55
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358337 WDR55-001 ENSG00000120314 9606 + 5:140664676-140672345 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastLiverLungPlacentaENST00000358337
Transcript ID Adipose Breast Liver Lung Placenta
ENST00000358337 10.649±0.00 2.230±0.00 5.177±0.00 1.917±0.00 5.883±0.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZH CIL_0006ZH_0001 CGP 5:140647058-140674124
CIL_0006ZK CIL_0006ZK_0001 CGP 5:140664676-140674124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005730 ISS nucleolus
GO:0005737 IEA cytoplasm
GO:0006364 ISS rRNA processing
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049323 Wdr55-201 protein_coding Mus_musculus 0 1057
ENSMUST00000118624 Gm13700-001 processed_pseudogene Mus_musculus 0 745
ENSMUST00000124038 Dnd1-003 retained_intron Mus_musculus 0 505
ENSMUST00000061522 Dnd1-001 protein_coding Mus_musculus 0 501
ENSMUST00000155827 Dnd1-002 retained_intron Mus_musculus 0 501
ENSMUST00000156725 Fbxl18-002 retained_intron Mus_musculus 0.000006 58

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