C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061745 Hoxd10-001 ENSMUSG00000050368 10090 + 2:74691924-74695105 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061745
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061745 7.320±9.60 8.354±3.47 0.032±0.02 0.322±0.24 0.036±0.00 3.845±0.73 0.029±0.01 0.050±0.00 2.079±0.35 2.884±0.76 0.702±0.27 0.442±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_00017N CIL_00017N_0002 CGP 2:74679557-74695105
CIL_00017O CIL_00017O_0002 CGP 2:74691924-74700208

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IGI skeletal system development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007338 IGI single fertilization
GO:0007519 IGI skeletal muscle tissue development
GO:0008344 IGI adult locomotory behavior
GO:0009952 IGI anterior/posterior pattern specification
GO:0009954 IGI proximal/distal pattern formation
GO:0010468 IGI regulation of gene expression
GO:0021520 IGI spinal cord motor neuron cell fate specification
GO:0030326 IGI embryonic limb morphogenesis
GO:0035136 IGI forelimb morphogenesis
GO:0035137 IGI hindlimb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048935 IGI peripheral nervous system neuron development
GO:0050905 IGI neuromuscular process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130837 hoxd10a-201 protein_coding Danio_rerio 0 228
ENSDART00000080608 hoxd10a-001 protein_coding Danio_rerio 0 228
ENSDART00000110682 hoxb1a-001 protein_coding Danio_rerio 0.00000000009 73
ENST00000249501 HOXD10-001 protein_coding Homo_sapiens 0 2525
ENST00000490088 HOXD10-002 processed_transcript Homo_sapiens 0 586
ENST00000549469 HOXD10-003 processed_transcript Homo_sapiens 0 507

Loading