C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: empty spiracles homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062216 Emx2-001 ENSMUSG00000043969 10090 + 19:59458372-59465357 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062216
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062216 5.727±5.22 0.116±0.03 0.075±0.03 5.112±3.47 2.154±1.56 0.017±0.00 10.381±3.56 0.024±0.01 0.011±0.00 0.105±0.09 18.115±9.29 0.239±0.32 1.036±0.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H6 CIL_0008H6_0002 VISTA 19:58967128-59568278
CIL_0007KI CIL_0007KI_0003 UCNEbase 19:59043463-60359839
CIL_0008MK CIL_0008MK_0002 VISTA 19:59123214-59725570
CIL_0008G5 CIL_0008G5_0002 VISTA 19:59165505-59766798
CIL_0007ZG CIL_0007ZG_0002 VISTA 19:59166736-59767688
CIL_0008EZ CIL_0008EZ_0002 VISTA 19:59169921-59771302
CIL_0007XD CIL_0007XD_0002 VISTA 19:59337323-59938561
CIL_0008ND CIL_0008ND_0002 VISTA 19:59417098-60018467
CIL_0004H1 CIL_0004H1_0003 CGP 19:59458372-59943654

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IMP brain development
GO:0009952 IMP anterior/posterior pattern specification
GO:0010468 IMP regulation of gene expression
GO:0021542 IMP dentate gyrus development
GO:0021796 IMP cerebral cortex regionalization
GO:0021846 IMP cell proliferation in forebrain
GO:0021885 IMP forebrain cell migration
GO:0021987 IGI cerebral cortex development
GO:0030182 IMP neuron differentiation
GO:0030900 IMP forebrain development
GO:0042493 IDA response to drug
GO:0043565 IEA sequence-specific DNA binding
GO:0072001 IGI renal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000022236 emx3-201 protein_coding Danio_rerio 5e-20 104
ENSDART00000139217 emx3-001 protein_coding Danio_rerio 0.00000000001 77
ENST00000442245 EMX2-201 protein_coding Homo_sapiens 0 1112
ENST00000546446 EMX2-003 processed_transcript Homo_sapiens 0 710
ENST00000553456 EMX2-001 protein_coding Homo_sapiens 0 2451
ENST00000616794 EMX2-002 protein_coding Homo_sapiens 0 1107

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