C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CREB3 regulatory factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296953 CREBRF-001 ENSG00000164463 9606 + 5:173056352-173139284 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296953
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296953 1.535±0.00 3.644±0.00 2.659±0.00 2.987±0.57 3.142±0.34 3.488±1.00 3.010±1.62 2.685±1.17 3.275±2.24 4.727±1.18 0.605±0.30 2.398±0.97 2.253±0.51 1.764±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0001 VISTA 5:172471670-173074006
CIL_000915 CIL_000915_0001 VISTA 5:172905793-173506594
CIL_0008HF CIL_0008HF_0001 VISTA 5:172963494-173565311
CIL_00023T CIL_00023T_0001 CGP 5:172983757-173139284
CIL_00023P CIL_00023P_0001 CGP 5:173056352-173164387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006810 IEA transport
GO:0006986 IEA response to unfolded protein
GO:0016604 IDA nuclear body
GO:0032388 IDA positive regulation of intracellular transport
GO:0034976 IDA response to endoplasmic reticulum stress
GO:0042711 IEA maternal behavior
GO:0043565 IEA sequence-specific DNA binding
GO:0045732 IDA positive regulation of protein catabolic process
GO:0051222 IDA positive regulation of protein transport
GO:1900102 IDA negative regulation of endoplasmic reticulum unfolded protein response
GO:1900170 IEA negative regulation of glucocorticoid mediated signaling pathway
GO:1902213 IEA positive regulation of prolactin signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062519 Crebrf-001 protein_coding Mus_musculus 0 4617
ENSMUST00000142539 Crebrf-002 protein_coding Mus_musculus 0 2292
ENSMUST00000144221 Crebrf-003 protein_coding Mus_musculus 0 1526
ENSMUST00000151681 Crebrf-004 protein_coding Mus_musculus 0 586
ENSMUST00000132972 Crebrf-005 retained_intron Mus_musculus 0 435

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