C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CREB3 regulatory factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520420 CREBRF-004 ENSG00000164463 9606 + 5:173056368-173091536 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartKidneyLungMusclePlacentaTestisENST00000520420
Transcript ID Bladder Colon Heart Kidney Lung Muscle Placenta Testis
ENST00000520420 5.423±0.00 2.539±0.00 1.520±0.00 2.465±0.00 5.312±0.00 0.656±0.00 1.553±0.00 3.139±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0001 VISTA 5:172471670-173074006
CIL_000915 CIL_000915_0001 VISTA 5:172905793-173506594
CIL_0008HF CIL_0008HF_0001 VISTA 5:172963494-173565311
CIL_00023T CIL_00023T_0001 CGP 5:172983757-173139284
CIL_00023P CIL_00023P_0001 CGP 5:173056352-173164387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006810 IEA transport
GO:0006986 IEA response to unfolded protein
GO:0016604 IDA nuclear body
GO:0032388 IDA positive regulation of intracellular transport
GO:0034976 IDA response to endoplasmic reticulum stress
GO:0043565 IEA sequence-specific DNA binding
GO:0045732 IDA positive regulation of protein catabolic process
GO:0051222 IDA positive regulation of protein transport
GO:1900102 IDA negative regulation of endoplasmic reticulum unfolded protein response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062519 Crebrf-001 protein_coding Mus_musculus 0 1814
ENSMUST00000144221 Crebrf-003 protein_coding Mus_musculus 0 1526
ENSMUST00000142539 Crebrf-002 protein_coding Mus_musculus 0 1519
ENSMUST00000132972 Crebrf-005 retained_intron Mus_musculus 6.00036e-42 176

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