C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475075 SLC6A9-005 ENSG00000196517 9606 - 1:43997443-44031386 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLungENST00000475075
Transcript ID Bladder Brain Lung
ENST00000475075 0.564±0.00 1.006±0.00 0.893±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B8 CIL_0009B8_0001 VISTA 1:43734711-44337665
CIL_0008SF CIL_0008SF_0001 VISTA 1:43949748-44550457

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005283 IEA sodium:amino acid symporter activity
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169885 Slc6a9-009 protein_coding Mus_musculus 0 2287
ENSMUST00000163288 Slc6a9-010 protein_coding Mus_musculus 0 2047
ENSMUST00000030269 Slc6a9-001 protein_coding Mus_musculus 0 2047
ENSMUST00000063857 Slc6a9-003 protein_coding Mus_musculus 0 2047
ENSMUST00000149168 Slc6a9-002 nonsense_mediated_decay Mus_musculus 0 1098
ENSMUST00000169990 Slc6a9-013 protein_coding Mus_musculus 0 830
ENSMUST00000132043 Slc6a9-006 protein_coding Mus_musculus 0 830
ENSMUST00000164853 Ccdc24-006 protein_coding Mus_musculus 0 311
ENSMUST00000123994 Slc6a9-011 protein_coding Mus_musculus 0 305
ENSMUST00000163974 Ccdc24-009 processed_transcript Mus_musculus 0 195
ENSMUST00000136476 Slc6a9-008 processed_transcript Mus_musculus 4e-39 167

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