C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 1 (elfin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068439 Pdlim1-001 ENSMUSG00000055044 10090 - 19:40221173-40271616 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068439
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068439 7.184±2.02 2.176±0.58 3.458±0.23 0.411±0.22 9.571±3.12 22.853±3.76 5.120±2.02 1.802±0.64 4.415±1.31 12.787±1.12 1.906±0.76 11.576±2.28 23.730±3.79 0.645±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095J CIL_00095J_0002 VISTA 19:40075645-40678667
CIL_0007T2 CIL_0007T2_0002 VISTA 19:40167411-40768695
CIL_00067J CIL_00067J_0002 CGP 19:40221173-40402267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005667 IDA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005925 IEA focal adhesion
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329399 PDLIM1-001 protein_coding Homo_sapiens 0 1125
ENST00000477757 PDLIM1-002 processed_transcript Homo_sapiens 0 702
ENST00000490391 PDLIM1-005 processed_transcript Homo_sapiens 0 207
ENST00000492511 PDLIM1-004 processed_transcript Homo_sapiens 0 372
ENST00000504327 PDLIM1P4-001 processed_pseudogene Homo_sapiens 0 484

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