C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD18 E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264926 RAD18-001 ENSG00000070950 9606 - 3:8877076-8963502 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000264926
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000264926 0.825±0.00 0.484±0.18 0.781±0.30 0.170±0.00 0.277±0.00 0.527±0.44 0.421±0.24 0.382±0.00 1.211±0.09 0.783±0.10 1.107±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005S5 CIL_0005S5_0001 CGP 3:8619400-8841808
CIL_0003C9 CIL_0003C9_0001 CGP 3:8733800-8841808
CIL_0003CT CIL_0003CT_0001 CGP 3:8750408-8963773
CIL_0004QQ CIL_0004QQ_0001 CGP 3:8775402-9363053

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000403 IDA Y-form DNA binding
GO:0000785 IEA chromatin
GO:0001741 IEA XY body
GO:0003677 IEA DNA binding
GO:0003684 NAS damaged DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 NAS nucleus
GO:0005657 IDA replication fork
GO:0006281 NAS:IEA DNA repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007283 IEA spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0009411 IEA response to UV
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031593 IDA polyubiquitin binding
GO:0031625 IPI ubiquitin protein ligase binding
GO:0045910 IEA negative regulation of DNA recombination
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077088 Rad18-001 protein_coding Mus_musculus 0 1016
ENSMUST00000132590 Rad18-003 processed_transcript Mus_musculus 0 976
ENSMUST00000135092 Rad18-004 processed_transcript Mus_musculus 0 963
ENSMUST00000068487 Rad18-002 protein_coding Mus_musculus 0 955
ENSMUST00000113180 Rad18-007 protein_coding Mus_musculus 0 955
ENSMUST00000113182 Rad18-006 protein_coding Mus_musculus 0 955
ENSMUST00000156063 Rad18-005 nonsense_mediated_decay Mus_musculus 0 806
ENSMUST00000142079 Rad18-008 protein_coding Mus_musculus 0 202

Loading