C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD18 E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415439 RAD18-002 ENSG00000070950 9606 - 3:8881264-8963431 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000415439
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000415439 0.950±0.00 0.743±0.00 1.285±0.00 1.932±0.00 1.065±0.60 0.310±0.00 0.318±0.00 1.353±0.00 1.407±0.60 0.921±0.52 1.983±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005S5 CIL_0005S5_0001 CGP 3:8619400-8841808
CIL_0003C9 CIL_0003C9_0001 CGP 3:8733800-8841808
CIL_0003CT CIL_0003CT_0001 CGP 3:8750408-8963773
CIL_0004QQ CIL_0004QQ_0001 CGP 3:8775402-9363053

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0006281 IEA DNA repair
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156063 Rad18-005 nonsense_mediated_decay Mus_musculus 0 935
ENSMUST00000135092 Rad18-004 processed_transcript Mus_musculus 0 806
ENSMUST00000068487 Rad18-002 protein_coding Mus_musculus 0 806
ENSMUST00000113180 Rad18-007 protein_coding Mus_musculus 0 806
ENSMUST00000113182 Rad18-006 protein_coding Mus_musculus 0 806
ENSMUST00000077088 Rad18-001 protein_coding Mus_musculus 0 806
ENSMUST00000132590 Rad18-003 processed_transcript Mus_musculus 0 765

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