C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070313 Prdm16-003 ENSMUSG00000039410 10090 - 4:154316125-154636866 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMusclePlacentaENSMUST00000070313
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta
ENSMUST00000070313 0.210±0.00 0.183±0.01 0.508±0.40 0.459±0.24 0.447±0.02 0.406±0.00 0.483±0.00 0.068±0.06 2.347±0.71 0.087±0.00 0.038±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099V CIL_00099V_0002 VISTA 4:154093365-154697126
CIL_0007TB CIL_0007TB_0002 VISTA 4:154156294-154757167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0017053 IDA transcriptional repressor complex
GO:0022008 IDA neurogenesis
GO:0030512 ISS negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030853 ISS negative regulation of granulocyte differentiation
GO:0035019 IDA somatic stem cell maintenance
GO:0043457 IDA regulation of cellular respiration
GO:0043565 IDA sequence-specific DNA binding
GO:0043586 IMP tongue development
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046332 IPI SMAD binding
GO:0046872 IEA metal ion binding
GO:0050872 IDA white fat cell differentiation
GO:0050873 IMP brown fat cell differentiation
GO:0060021 IMP palate development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000086053 prdm16-201 protein_coding Danio_rerio 0 529
ENSDART00000122737 prdm16-001 protein_coding Danio_rerio 0 529
ENST00000270722 PRDM16-001 protein_coding Homo_sapiens 0 3921
ENST00000378389 PRDM16-005 processed_transcript Homo_sapiens 0 730
ENST00000378391 PRDM16-003 protein_coding Homo_sapiens 0 3941
ENST00000463591 PRDM16-004 protein_coding Homo_sapiens 9.94922e-44 180
ENST00000509860 PRDM16-002 protein_coding Homo_sapiens 0 3160
ENST00000511072 PRDM16-007 protein_coding Homo_sapiens 0 4169
ENST00000512462 PRDM16-009 processed_transcript Homo_sapiens 0 3371
ENST00000514189 PRDM16-008 protein_coding Homo_sapiens 0 4080
ENST00000606170 PRDM16-011 retained_intron Homo_sapiens 0 261
ENST00000607632 PRDM16-010 retained_intron Homo_sapiens 0 597

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