C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071077 Spata18-202 ENSMUSG00000029155 10090 + 5:73651380-73679484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartLungOvaryTestisENSMUST00000071077
Transcript ID Bladder Heart Lung Ovary Testis
ENSMUST00000071077 0.023±0.00 0.172±0.06 7.550±1.56 3.984±2.64 209.543±5.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CP CIL_0001CP_0002 CGP 5:73632749-73679484
CIL_0001CQ CIL_0001CQ_0002 CGP 5:73651380-74068430

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0005741 ISS mitochondrial outer membrane
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0030154 IEA cell differentiation
GO:0035694 ISS mitochondrial protein catabolic process
GO:0035695 ISS mitochondrion degradation by induced vacuole formation
GO:0036126 IEA sperm flagellum
GO:0043231 ISS intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295213 SPATA18-001 protein_coding Homo_sapiens 0 784
ENST00000419395 SPATA18-002 protein_coding Homo_sapiens 0 784
ENST00000505320 SPATA18-004 nonsense_mediated_decay Homo_sapiens 0 669
ENST00000511028 SPATA18-003 retained_intron Homo_sapiens 0 669

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