C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IXb
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071935 Myo9b-201 ENSMUSG00000004677 10090 + 8:71272714-71360712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071935
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071935 4.590±1.29 2.026±0.31 2.247±0.51 3.647±0.89 4.516±0.92 3.326±0.87 1.818±0.44 1.615±0.31 1.460±0.65 5.918±0.66 0.469±0.19 5.480±1.84 3.374±1.89 1.372±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GM CIL_0006GM_0002 CGP 8:71248561-71360712
CIL_0006GE CIL_0006GE_0002 CGP 8:71272714-71369732

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000146 IDA microfilament motor activity
GO:0001726 IDA ruffle
GO:0002548 IMP monocyte chemotaxis
GO:0005100 IDA Rho GTPase activator activity
GO:0005524 IEA ATP binding
GO:0007266 IMP Rho protein signal transduction
GO:0008152 IEA metabolic process
GO:0016459 IEA myosin complex
GO:0030010 IMP establishment of cell polarity
GO:0030027 IDA lamellipodium
GO:0032321 IDA positive regulation of Rho GTPase activity
GO:0032433 IDA filopodium tip
GO:0046872 IEA metal ion binding
GO:0048246 IMP macrophage chemotaxis
GO:0072673 IMP lamellipodium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000112478 MYO9B (1 of 3)-201 protein_coding Danio_rerio 0 739
ENST00000397274 MYO9B-201 protein_coding Homo_sapiens 0 3362
ENST00000593411 MYO9B-006 processed_transcript Homo_sapiens 0 468
ENST00000593533 MYO9B-004 retained_intron Homo_sapiens 0 468
ENST00000594824 MYO9B-002 protein_coding Homo_sapiens 0 3384
ENST00000594971 MYO9B-007 protein_coding Homo_sapiens 0 422
ENST00000595618 MYO9B-001 protein_coding Homo_sapiens 0 3384
ENST00000595641 MYO9B-003 protein_coding Homo_sapiens 0 3328
ENST00000598101 MYO9B-008 retained_intron Homo_sapiens 0 409
ENST00000598464 MYO9B-011 retained_intron Homo_sapiens 3.00004e-41 171
ENST00000599420 MYO9B-013 retained_intron Homo_sapiens 0 239
ENST00000601749 MYO9B-010 retained_intron Homo_sapiens 0 451
ENST00000602177 MYO9B-009 protein_coding Homo_sapiens 0 383

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