C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IXB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000595618 MYO9B-001 ENSG00000099331 9606 + 19:17075781-17213295 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverLungOvaryENST00000595618
Transcript ID Breast Colon Heart Liver Lung Ovary
ENST00000595618 1.869±0.00 2.493±0.00 3.391±0.00 1.980±0.76 7.624±0.00 3.427±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GM CIL_0006GM_0001 CGP 19:17049729-17214537
CIL_0006GE CIL_0006GE_0001 CGP 19:17075781-17219829

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000146 IDA microfilament motor activity
GO:0001726 IEA ruffle
GO:0002548 IEA monocyte chemotaxis
GO:0003774 IEA motor activity
GO:0003779 IDA actin binding
GO:0005096 IEA GTPase activator activity
GO:0005100 IDA Rho GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005516 IDA calmodulin binding
GO:0005524 IDA:IEA ATP binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005884 IEA actin filament
GO:0005938 IDA cell cortex
GO:0006200 IEA ATP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007266 IC Rho protein signal transduction
GO:0008270 IEA zinc ion binding
GO:0015629 TAS actin cytoskeleton
GO:0016020 IDA membrane
GO:0016459 IEA myosin complex
GO:0016887 IDA ATPase activity
GO:0030010 IEA establishment of cell polarity
GO:0030027 IEA lamellipodium
GO:0030048 TAS actin filament-based movement
GO:0030898 IEA actin-dependent ATPase activity
GO:0031941 IDA filamentous actin
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0032433 IEA filopodium tip
GO:0035556 IEA intracellular signal transduction
GO:0043008 IEA ATP-dependent protein binding
GO:0043531 IDA ADP binding
GO:0048246 IEA macrophage chemotaxis
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051015 IEA actin filament binding
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0072673 IEA lamellipodium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071935 Myo9b-201 protein_coding Mus_musculus 0 3384
ENSMUST00000168839 Myo9b-202 protein_coding Mus_musculus 0 3384
ENSMUST00000170242 Myo9b-203 protein_coding Mus_musculus 0 3384
ENSDART00000045539 myo5c-201 protein_coding Danio_rerio 1e-24 121
ENSDART00000153975 myo5c-001 protein_coding Danio_rerio 1e-24 121
ENSMUST00000144725 Myo1g-002 nonsense_mediated_decay Mus_musculus 2e-18 100
ENSMUST00000003459 Myo1g-001 protein_coding Mus_musculus 2e-18 100
ENSMUST00000131823 Myo1g-006 retained_intron Mus_musculus 0.00000000000001 88
ENSMUST00000156878 Myo1g-004 retained_intron Mus_musculus 0.0000000000002 84
ENSDART00000042203 myo6b-201 protein_coding Danio_rerio 0.0000002 64
ENSDART00000088801 myo6b-202 protein_coding Danio_rerio 0.0000002 64
ENSDART00000131566 myo6b-002 protein_coding Danio_rerio 0.0000002 64
ENSDART00000061762 myo6b-001 protein_coding Danio_rerio 0.0000002 64

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