C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IXB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397274 MYO9B-201 ENSG00000099331 9606 + 19:17101656-17213294 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyMuscleOvaryPlacentaTestisENST00000397274
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Muscle Ovary Placenta Testis
ENST00000397274 5.920±0.00 11.392±0.00 2.507±0.00 0.726±0.00 2.753±0.00 4.053±0.00 0.840±0.33 4.287±1.05 9.527±0.87 6.928±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GM CIL_0006GM_0001 CGP 19:17049729-17214537
CIL_0006GE CIL_0006GE_0001 CGP 19:17075781-17219829

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000146 IDA microfilament motor activity
GO:0003774 IEA motor activity
GO:0003779 IDA actin binding
GO:0005100 IDA Rho GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005516 IDA calmodulin binding
GO:0005524 IDA:IEA ATP binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005938 IDA cell cortex
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007266 IC Rho protein signal transduction
GO:0015629 TAS actin cytoskeleton
GO:0016020 IDA membrane
GO:0016459 IEA myosin complex
GO:0016887 IDA ATPase activity
GO:0030048 TAS actin filament-based movement
GO:0031941 IDA filamentous actin
GO:0035556 IEA intracellular signal transduction
GO:0043531 IDA ADP binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071935 Myo9b-201 protein_coding Mus_musculus 0 3362
ENSMUST00000168839 Myo9b-202 protein_coding Mus_musculus 0 3362
ENSMUST00000170242 Myo9b-203 protein_coding Mus_musculus 0 3362
ENSDART00000045539 myo5c-201 protein_coding Danio_rerio 1e-24 121
ENSDART00000153975 myo5c-001 protein_coding Danio_rerio 1e-24 121
ENSMUST00000144725 Myo1g-002 nonsense_mediated_decay Mus_musculus 2e-18 100
ENSMUST00000003459 Myo1g-001 protein_coding Mus_musculus 2e-18 100
ENSMUST00000131823 Myo1g-006 retained_intron Mus_musculus 0.00000000000001 88
ENSMUST00000156878 Myo1g-004 retained_intron Mus_musculus 0.0000000000002 84
ENSDART00000042203 myo6b-201 protein_coding Danio_rerio 0.0000002 64
ENSDART00000088801 myo6b-202 protein_coding Danio_rerio 0.0000002 64
ENSDART00000131566 myo6b-002 protein_coding Danio_rerio 0.0000002 64
ENSDART00000061762 myo6b-001 protein_coding Danio_rerio 0.0000002 64

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