C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 19kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000505459 SRP19-001 ENSG00000153037 9606 + 5:112861222-112869788 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UN CIL_0004UN_0001 CGP 5:112861188-112922539

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005786 IDA signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006613 TAS cotranslational protein targeting to membrane
GO:0006614 TAS:IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IDA:IEA 7S RNA binding
GO:0010467 TAS gene expression
GO:0042493 IDA response to drug
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072576 Srp19-001 protein_coding Mus_musculus 0 577
ENSMUST00000142010 Srp19-003 nonsense_mediated_decay Mus_musculus 4.00001e-41 174
ENSMUST00000140279 Srp19-002 retained_intron Mus_musculus 4.00001e-41 174
ENSMUST00000119329 Srp19-006 protein_coding Mus_musculus 9.99995e-41 172
ENSMUST00000131713 Srp19-005 processed_transcript Mus_musculus 0.000000000003 79
ENSMUST00000038014 Dnajc16-001 protein_coding Mus_musculus 0.0000003 62

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