C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 5A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073430 Stx5a-002 ENSMUSG00000010110 10090 + 19:8741803-8755642 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073430
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073430 32.529±6.71 17.552±2.27 21.601±2.10 11.012±6.26 20.329±2.18 18.860±2.98 7.515±1.61 16.297±1.71 13.962±2.88 18.793±2.15 4.340±1.23 25.290±10.56 30.132±10.69 20.098±9.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005484 IEA SNAP receptor activity
GO:0006886 IEA intracellular protein transport
GO:0016021 IEA integral component of membrane
GO:0016192 TAS vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294179 STX5-001 protein_coding Homo_sapiens 0 1679
ENST00000377897 STX5-002 protein_coding Homo_sapiens 0 1151
ENST00000394690 STX5-005 protein_coding Homo_sapiens 0 1434
ENST00000431400 STX5-007 protein_coding Homo_sapiens 0 558
ENST00000486437 STX5-006 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000488303 STX5-008 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000491231 STX5-004 nonsense_mediated_decay Homo_sapiens 0 1587
ENST00000492066 STX5-003 nonsense_mediated_decay Homo_sapiens 0 1256

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