C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin IX
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073459 Syt9-001 ENSMUSG00000062542 10090 + 7:107370790-107548656 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073459
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073459 0.332±0.00 0.482±0.19 0.091±0.02 2.824±0.96 0.141±0.09 0.211±0.09 0.032±0.01 0.464±0.08 0.198±0.12 0.115±0.03 0.175±0.10 0.417±0.19 0.294±0.12 0.517±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HA CIL_0007HA_0002 CGP 7:107209445-107548656
CIL_0001FU CIL_0001FU_0003 CGP 7:107370728-107591094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IPI protein binding
GO:0006810 IEA transport
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0017158 IEA regulation of calcium ion-dependent exocytosis
GO:0030054 IEA cell junction
GO:0030141 IEA secretory granule
GO:0030667 IEA secretory granule membrane
GO:0031045 IDA dense core granule
GO:0042802 IPI identical protein binding
GO:0045956 IEA positive regulation of calcium ion-dependent exocytosis
GO:0046872 IEA metal ion binding
GO:0050796 IEA regulation of insulin secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318881 SYT9-001 protein_coding Homo_sapiens 0 2337
ENST00000524820 SYT9-003 nonsense_mediated_decay Homo_sapiens 0 1136
ENST00000532592 SYT9-002 nonsense_mediated_decay Homo_sapiens 0 798

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