C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histocompatibility 2, class II antigen E beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074557 H2-Eb1-001 ENSMUSG00000060586 10090 + 17:34305877-34316199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074557
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074557 142.042±15.13 46.756±3.23 104.758±4.85 0.481±0.21 346.083±25.67 83.141±3.07 30.137±12.17 77.564±12.94 11.018±10.64 163.930±22.45 11.507±11.28 78.211±14.65 4.181±6.66 3.169±1.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PL CIL_0001PL_000A CGP 17:34282744-34316199
CIL_0001PK CIL_0001PK_0007 CGP 17:34305877-34340229

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006955 IEA immune response
GO:0016021 IEA integral component of membrane
GO:0019886 IDA antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0042613 IEA MHC class II protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307137 HLA-DRB3-001 protein_coding Homo_sapiens 0 654
ENST00000360004 HLA-DRB1-001 protein_coding Homo_sapiens 0 662
ENST00000374975 HLA-DRB5-001 protein_coding Homo_sapiens 0 632
ENST00000383126 HLA-DRB3-001 protein_coding Homo_sapiens 0 654
ENST00000411565 HLA-DRB4-001 protein_coding Homo_sapiens 0 608
ENST00000411959 HLA-DRB1-001 protein_coding Homo_sapiens 0 603
ENST00000412634 HLA-DRB1-002 protein_coding Homo_sapiens 0 497
ENST00000417532 HLA-DRB8-001 unprocessed_pseudogene Homo_sapiens 0 351
ENST00000419200 HLA-DRB2-001 unprocessed_pseudogene Homo_sapiens 0 278
ENST00000419393 HLA-DRB1-001 protein_coding Homo_sapiens 0 706
ENST00000421942 HLA-DRB7-001 unprocessed_pseudogene Homo_sapiens 0 599
ENST00000422566 HLA-DRB7-001 unprocessed_pseudogene Homo_sapiens 0 604
ENST00000426847 HLA-DRB1-001 protein_coding Homo_sapiens 0 654
ENST00000433975 HLA-DRB1-002 protein_coding Homo_sapiens 0 448
ENST00000436297 HLA-DRB8-001 unprocessed_pseudogene Homo_sapiens 0 449
ENST00000437595 HLA-DRB7-001 unprocessed_pseudogene Homo_sapiens 0 604
ENST00000437784 HLA-DRB1-001 protein_coding Homo_sapiens 0 632
ENST00000444645 HLA-DRB1-001 protein_coding Homo_sapiens 0 632
ENST00000452263 HLA-DRB2-001 unprocessed_pseudogene Homo_sapiens 0 278
ENST00000457451 HLA-DRB4-001 protein_coding Homo_sapiens 0 608
ENST00000460546 HLA-DRB1-002 processed_transcript Homo_sapiens 0 448
ENST00000547498 HLA-DRB1-214 protein_coding Homo_sapiens 0 575
ENST00000548083 HLA-DRB1-209 protein_coding Homo_sapiens 0 603
ENST00000553034 HLA-DRB1-210 protein_coding Homo_sapiens 0 712
ENST00000611013 HLA-DRB3-201 protein_coding Homo_sapiens 0 671
ENST00000611060 HLA-DRB1-201 protein_coding Homo_sapiens 0 676
ENST00000613743 HLA-DRB3-202 protein_coding Homo_sapiens 0 688
ENST00000613978 HLA-DRB1-211 protein_coding Homo_sapiens 0 706
ENST00000614039 HLA-DRB1-212 protein_coding Homo_sapiens 0 706
ENST00000614473 HLA-DRB1-215 protein_coding Homo_sapiens 0 638
ENST00000614901 HLA-DRB3-203 protein_coding Homo_sapiens 0 699
ENST00000615274 HLA-DRB1-217 protein_coding Homo_sapiens 0 575
ENST00000615644 HLA-DRB1-201 protein_coding Homo_sapiens 0 658
ENST00000615998 HLA-DRB1-213 protein_coding Homo_sapiens 0 715
ENST00000616879 HLA-DRB3-204 protein_coding Homo_sapiens 0 671
ENST00000617823 HLA-DRB1-216 protein_coding Homo_sapiens 0 632
ENST00000618157 HLA-DRB4-201 protein_coding Homo_sapiens 0 590
ENST00000618225 HLA-DRB3-205 protein_coding Homo_sapiens 0 693
ENST00000618380 HLA-DRB1-202 protein_coding Homo_sapiens 0 617
ENST00000620951 HLA-DRB1-218 protein_coding Homo_sapiens 0 632
ENST00000621579 HLA-DRB1-219 protein_coding Homo_sapiens 0 638

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